Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2220 95.1 9e-15 >seq2220 Length=173857 Score = 95.1 bits (104), Expect = 9e-15 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 22682 AAGC-CAAGGCACAGTGGGCTGCACAATGGCTGAATGCCACACATAAGTCTATCGCAACA 22740 |||| ||||||| | ||||| || |||| | || || |||| | |||| || Sbjct 65063 AAGCGCAAGGCAGACTGGGCGTTACGATGGATATCTGACAAACATGCCACATTCGCTACC 65122 Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 || || | || ||||| |||||||| ||| || | ||||| || || || || | ||| Sbjct 65123 CGACTAGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATA 65182 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| || || ||| | |||||||| | || || || ||||| | || || Sbjct 65183 TTCTGGCTCAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGT 65242 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCA 22907 |||||||| || | ||| |||||||||||| | | ||||| || Sbjct 65243 CGTGACGAGGGGATGCACACAGACTTTGCTTGTCTTTTATTTAGCCA 65289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || || || || || || || || | || ||||| || ||||| |||| |||||||| Sbjct 63143 GCATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCTGGCTC 63084 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| |||||||| || | | || ||||||||| | || |||||||| || Sbjct 63083 AAGAAACGCGGTCTCATGCCTGGTCTCACTTTCTCCAACGAGCTCATCAGCCGTGATGAG 63024 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCA 22907 ||| | ||| ||||||||||| |||| || || || Sbjct 63023 GGTATGCACACCGACTTTGCTTGCTTGCTCTTCAGCCA 62986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356204758771129