Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2220 174 2e-38 seq4642 89.7 7e-13 >seq2220 Length=173857 Score = 174 bits (192), Expect = 2e-38 Identities = 365/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| |||||||| | ||| || |||||||| || || | ||| || ||||| | || Sbjct 65260 GTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCC 65201 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||||||| ||||| ||||| || || || || || ||||||||||| || || || || Sbjct 65200 ACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGC 65141 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCTGTCATGTATCCACTTTTGAGC 50150 ||||| ||||| |||| | | |||| ||||| |||||| | || Sbjct 65140 AGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGC 65081 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| || ||||| || || || || | ||||| |||| || ||| | | Sbjct 65080 CCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCG 65021 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 ||||| ||| || | || ||||| | || ||| | || ||||| ||||| Sbjct 65020 CTCATTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTT 64961 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330 || || || || || ||||| || |||| ||| || | |||||| || || | | Sbjct 64960 CTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGA 64901 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 ||| || ||| | | ||| ||||| ||||| ||||| || || || || || || || Sbjct 64900 AAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAAC 64841 Query 50391 ATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTTT 50447 |||| || ||||| ||| || | |||| | ||||||| || | || || | Sbjct 64840 ATGTGAGATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGT 64781 Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507 || | ||| | |||||| | |||||||| || ||||| || ||||| ||||| ||||| Sbjct 64780 GGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCA 64721 Query 50508 GAT 50510 || Sbjct 64720 AAT 64718 >seq4642 Length=14046 Score = 89.7 bits (98), Expect = 7e-13 Identities = 150/214 (70%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 80263 GTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA---GCTAGAC 80319 || |||||||| ||||||||| ||||| |||| || | || || ||| Sbjct 10242 GTGTCATAGATACCCTCTATGGAGTCATCTTTCATACAAACCAAGAAGCATGAGCTT--- 10298 Query 80320 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 80379 | ||| || || ||| || |||||||||| || || || |||||||| || | | Sbjct 10299 AGTTGCGGATGAGGAGTGCCAGCATTAAATAGAGTTGGCGACGCGTGCGTGAAGTAACGT 10358 Query 80380 TCAGACAGTAGATTGTACGTCTCAAT--AGCTGATTCTATATCCCATTGATGAATTCCTA 80437 ||||||| || |||||||||||||| |||| || |||||| | || || || | Sbjct 10359 TCAGACATAAGGTTGTACGTCTCAATGACGCTG--TCGATATCCTGCTTGTGGATGCCCA 10416 Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 | ||||||||||| | |||||| ||||| | ||| Sbjct 10417 CTGCGACACGCATGATCATGTGTTGAGGACGTTC 10450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718209156754520