Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2220 132 6e-26 >seq2220 Length=173857 Score = 132 bits (146), Expect = 6e-26 Identities = 356/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| ||||| || | ||| || | |||||| || || | ||| || ||||| | || Sbjct 65260 GTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCC 65201 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||||||| ||||| |||||||| || || || || ||||||||||| || || || || Sbjct 65200 ACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGC 65141 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA---CTGTCATGTATCCACTTTTGAGC 42255 ||||| |||| |||| | | |||| ||||| |||||| | || Sbjct 65140 AGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGC 65081 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| || ||||| || || || || | ||||| |||| || ||| | | Sbjct 65080 CCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCG 65021 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 ||||| ||| || | || ||||| | || ||| | || ||||| ||||| Sbjct 65020 CTCATTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTT 64961 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || || || || || ||||| || |||| || || | || ||| || || | | Sbjct 64960 CTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGA 64901 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 ||| || ||| | | ||| || || ||||| ||||| || || || || || || || Sbjct 64900 AAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAAC 64841 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCTTT 42552 |||| || |||| ||| | | |||| ||||||| || | || || | Sbjct 64840 ATGTGAGATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGT 64781 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 || | ||| | |||||| | |||||||| || || || || ||||| ||||| ||||| Sbjct 64780 GGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCA 64721 Query 42613 GAT 42615 || Sbjct 64720 AAT 64718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671083470278680