Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2220 140 5e-28 seq6583 93.3 6e-14 >seq2220 Length=173857 Score = 140 bits (154), Expect = 5e-28 Identities = 373/563 (66%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | || ||| | ||||| Sbjct 63557 ATATGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACTGCTGAGGAGATGGATCTC 63498 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || ||| | | || ||| | ||| | | ||| | ||||| | || ||||| Sbjct 63497 TCAAAAGACGTTCATGACTGGACCAACCGTCTCAATGACAACGAGCGCCACTTCATATCA 63438 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | | |||||||| || | |||||||| |||||||| || || || ||||| || Sbjct 63437 CATGTACTCGCCTTCTTCGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTGAG-CG 63379 Query 125198 ATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||||| | ||| || | || || | |||||| ||||| |||||||| |||| Sbjct 63378 TTTCTCCAATGAGGTTCAGGCCGCC-GAAGCCCGGTGCTTCTACGGTTTCCAAATTATGA 63320 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG- 125315 | ||||| | ||||| || | ||||| || || |||| || || ||||| Sbjct 63319 TGGAGAATATTCACTCTGAGACCTACTCACTCCTCATCGACACCTATATCAAGGATCCCA 63260 Query 125316 --CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA---- 125369 ||||| || || || || | || || || || | || | ||| || Sbjct 63259 GACAACGCGAATAC---CTTTTCGATGCCATGGAGACCATTCCCTG----CGTTAAGCGC 63207 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | |||||| ||| | || | | || || || || Sbjct 63206 AAGGCCGACTGGGCACTGAAGTGGATAACTGATCAACGTTCCACCTTTGCTGAACGATTG 63147 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || |||||||| ||||| ||||| |||||||| || || ||||| ||||||| ||| Sbjct 63146 GTAGCATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCTGG 63087 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||| ||||| |||||||| || || || | |||||| | || || || Sbjct 63086 CTCAAGAAACGCGGTCTCATGCCTGGTCTCACTTTCTCCAACGAGCTCATCAGCCGTGAT 63027 Query 125550 GAGGGCCTACACTGTGACTTTGC 125572 ||||| | ||| |||||||| Sbjct 63026 GAGGGTATGCACACCGACTTTGC 63004 Score = 132 bits (146), Expect = 7e-26 Identities = 372/561 (66%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| | ||||||||||| || |||| || |||||||| | |||||| | ||||| Sbjct 64718 ATTTGGAACATGTACAAAAAAGCCGAGGCTTCTTTTTGGACCGCCGAAGAAATGGATCTC 64777 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||| ||| | ||| ||| | || || | ||| || ||| || | || || || Sbjct 64778 TCCACTGACATTATCGACTGGAATACCCGCCTAACTTCAAATGAACGTCATTTCATCTCA 64837 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || |||| || ||||| || | ||||| || || ||||| || ||||| ||||| || Sbjct 64838 CATGTTTTAGCTTTCTTCGCTGCATCCGACGGCATAGTCAATGAGAATCTGGTTGA-GCG 64896 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 || || | ||| | ||| |||| | ||| ||||||||||| ||||||||||||| Sbjct 64897 GTTTTCGAACGAGGTTCAGATTGCAGAAG-CTCGATGCTTTTACGGGTTCCAAATCATGA 64955 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 | |||||| | || || || | || || || || |||| ||| ||| | Sbjct 64956 TCGAGAACATCCATTCCGAGACCTATTCACTCCTTATCGACACCCTCATCAAGGAT-GTC 65014 Query 125317 AACG-TAAACACATGCTCTTTAACGCAATCGACACGGT----GCCGTCTATACGTAAAAA 125371 || | || | || || | ||||| || | | ||||| || || || Sbjct 65015 AATGAGCGGCAGTTTCTTTTCGATGCAATAGAGTCCATACCCGCCGT-TAAGCG---CAA 65070 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| | | || ||||| |||| | | | | | ||| | |||| || Sbjct 65071 GGCAGACTGGGCGTTACGATGGATATCTGACAAACATGCCACATTCGCTACCCGACTAGT 65130 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || || || || || ||||||||||||||||| ||| ||| || | || || ||||| Sbjct 65131 TGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGGCT 65190 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||| ||||| ||| | ||||| || || | | ||||| | || ||| ||||| Sbjct 65191 CAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGACGA 65250 Query 125552 GGGCCTACACTGTGACTTTGC 125572 ||| | ||| |||||||| Sbjct 65251 GGGGATGCACACAGACTTTGC 65271 Score = 89.7 bits (98), Expect = 8e-13 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 |||||||||||| |||||| ||| || ||||||| |||||||| ||||| || |||| Sbjct 62835 ATTGGCATGAACGCCAAGCTCATGCGCCAGTACATCGAGTTTGTCGCAGACCGCTTACT- 62777 Query 125760 TACGAGTTGATTGG---CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 | || | | || | ||| | |||||| | | |||||||| || |||||| | Sbjct 62776 --AGTGTCGCTGGGTAACGAGAAGGTGTACAACTCTACCAATCCCTTCGACTTCATGGAC 62719 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || || ||| | || ||||| ||||| ||||||||| Sbjct 62718 ATGATCTCGCTACAAGGCAAGACGAACTTCTTCGAGAAG 62680 >seq6583 Length=89991 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 70056 ACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCA 70115 |||||| |||||||||||| || || ||||| || || |||||||| |||| || | | Sbjct 18412 ACAGACGAGAGGGCGATCTCGGCCCTGTGTATGGGTTTCAGTGGAGACACTTTGGTGCAA 18471 Query 70116 AGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCA 70175 | ||||| || || || |||||||| | || || ||||| ||||| || || | || Sbjct 18472 ACTATGTCGATTGTGACACAGACTACACTGGGCAAGGTGTAGATCAGCTGAAGGAATGCA 18531 Query 70176 TTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTG 70235 || | | |||| ||||||| ||| | |||| | || | |||||||||| | Sbjct 18532 TTCAGAAGATCAAAGATGATCCAACCGATCGACGGATAATCTTGAGTGCATGGAATCCAG 18591 Query 70236 CAGATT 70241 ||| || Sbjct 18592 CAGGTT 18597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740997664296680