Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4212 111 4e-19 seq1236 107 4e-18 seq2220 98.7 2e-15 seq4824 91.5 3e-13 >seq4212 Length=20478 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| ||||| || || || | ||| || || || || ||||| ||||| Sbjct 2331 TCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAG 2272 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| ||||| || || || || || || ||||||||||| || || ||||| Sbjct 2271 ATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2212 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || | || ||||| | ||||| || ||||| || || || || || Sbjct 2211 TCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACG 2152 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2151 AAAATCTGCAT 2141 >seq1236 Length=761 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 ||| ||||| | || ||||||||||| || || | ||||| || ||||| || || || Sbjct 2 ACCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTC 61 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 |||||||| |||||||| || ||||| || | || ||| | |||||||| | || Sbjct 62 CTTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGT 121 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || ||||| ||||| |||||||| Sbjct 122 GATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160 >seq2220 Length=173857 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 ||||||||||||| ||||| || || || |||||||| || ||||| || |||| || | Sbjct 65127 TAGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCT 65186 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 || | || || | || | |||||||| | ||||||| |||||| | || || | | Sbjct 65187 GGCTCAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTG 65246 Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 |||| || | ||| ||||| |||||| | ||||||| Sbjct 65247 ACGAGGGGATGCACACAGACTTTGCTTGTCTTTTATTTA 65285 >seq4824 Length=32535 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||| || || || || | ||| ||||| | || || || Sbjct 127 GTGGACTCCTTCTGAATGTTATAATCTGAGAGCGTACGACCATCTTCCAACTGCTTCCCT 68 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||||||||| || ||||| || ||||||||||| || || Sbjct 67 GCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTC 8 Query 104483 ACATT 104487 || || Sbjct 7 ACGTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151300400524244