Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 111 4e-19
seq1236 107 4e-18
seq2220 98.7 2e-15
seq4824 91.5 3e-13
>seq4212
Length=20478
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| ||||| ||||| || || || | ||| || || || || ||||| |||||
Sbjct 2331 TCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAG 2272
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||| ||||| || || || || || || ||||||||||| || || |||||
Sbjct 2271 ATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2212
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||| || | || ||||| | ||||| || ||||| || || || || ||
Sbjct 2211 TCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACG 2152
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 2151 AAAATCTGCAT 2141
>seq1236
Length=761
Score = 107 bits (118), Expect = 4e-18
Identities = 119/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460
||| ||||| | || ||||||||||| || || | ||||| || ||||| || || ||
Sbjct 2 ACCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTC 61
Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520
|||||||| |||||||| || ||||| || | || ||| | |||||||| | ||
Sbjct 62 CTTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGT 121
Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || ||||| || || ||||| ||||| ||||||||
Sbjct 122 GATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160
>seq2220
Length=173857
Score = 98.7 bits (108), Expect = 2e-15
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195
||||||||||||| ||||| || || || |||||||| || ||||| || |||| || |
Sbjct 65127 TAGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCT 65186
Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255
|| | || || | || | |||||||| | ||||||| |||||| | || || | |
Sbjct 65187 GGCTCAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTG 65246
Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294
|||| || | ||| ||||| |||||| | |||||||
Sbjct 65247 ACGAGGGGATGCACACAGACTTTGCTTGTCTTTTATTTA 65285
>seq4824
Length=32535
Score = 91.5 bits (100), Expect = 3e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| ||||| || || || || | ||| ||||| | || || ||
Sbjct 127 GTGGACTCCTTCTGAATGTTATAATCTGAGAGCGTACGACCATCTTCCAACTGCTTCCCT 68
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||||||||||||||| || ||||| || ||||||||||| || ||
Sbjct 67 GCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTC 8
Query 104483 ACATT 104487
|| ||
Sbjct 7 ACGTT 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151300400524244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |