Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1236 105 6e-18 seq4212 100 3e-16 >seq1236 Length=761 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| ||||| ||||||| | | ||| || || ||||||||||| || || Sbjct 5 ATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCCTT 64 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || |||||||| || | ||| |||||| | || || || | |||||| Sbjct 65 ATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTGAT 124 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| || || || ||||| |||||||||||||||| Sbjct 125 GGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCATGC 162 >seq4212 Length=20478 Score = 100 bits (110), Expect = 3e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||| || || || | |||||||||| || | || || |||||| ||||| || | Sbjct 1881 GTAGACTCTTTCTGGATGTTATAATCGGACA--GCGTACGACCATCCTCAAGCTGCTTGC 1824 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | ||||| | | || || || ||||||||||| || ||||| | || || |||| Sbjct 1823 CAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCT 1764 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | ||| ||||||| || || || | |||||||||||| || || || | Sbjct 1763 TTACATTGTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGG 1704 Query 94989 TTTTCACAAAGATCTGCATGC 95009 | || |||||||||||||||| Sbjct 1703 TCTTGACAAAGATCTGCATGC 1683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448253975019480