Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq5101 96.9 5e-16
seq41 91.5 2e-14
seq6254 87.8 3e-13
>seq5101
Length=28391
Score = 96.9 bits (106), Expect = 5e-16
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546
||||| |||||||| ||||||||||| |||||||||||| |||| || | |||| ||
Sbjct 6648 GCTATTCGTCGTCTTGCTCGTCGTGGAGGAGTCAAGCGTATCTCGGGCCTCATCTACGAG 6707
Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584
|||| ||||| ||| |||||||| ||||| ||| |||
Sbjct 6708 GAGACTCGTGGTGTCTTGAAGATTTTCCTTGAGAACGT 6745
>seq41
Length=15714
Score = 91.5 bits (100), Expect = 2e-14
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||| || || ||||| || || |||||||| || |||||||| || ||||||||| ||||
Sbjct 4556 AGGCATAACGAAGCCTGCCATTCGTCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTC 4497
Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575
||| | |||| || |||| |||| ||| |||||||||||||
Sbjct 4496 TGGTCTTATCTACGAGGAGACCCGTGGTGTCCTGAAGATCTTCCT 4452
>seq6254
Length=50532
Score = 87.8 bits (96), Expect = 3e-13
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 16468 CCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGT 16527
|| ||| || || ||||| ||||| |||||||| || |||||||| || || || ||| |
Sbjct 18122 CCTAGGCATAACGAAGCCTGCTATTCGTCGTCTCGCCCGTCGTGGCGGTGTTAAACGTAT 18063
Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575
|||||| | |||| ||||||| |||| ||| | |||||||||||
Sbjct 18062 CTCTGGTCTTATCTACGAAGAGACCCGTGGTGTCCTCAAGATCTTCCT 18015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069126258599
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |