Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5101 96.9 5e-16 seq41 91.5 2e-14 seq6254 87.8 3e-13 >seq5101 Length=28391 Score = 96.9 bits (106), Expect = 5e-16 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||| |||||||| ||||||||||| |||||||||||| |||| || | |||| || Sbjct 6648 GCTATTCGTCGTCTTGCTCGTCGTGGAGGAGTCAAGCGTATCTCGGGCCTCATCTACGAG 6707 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| ||||| ||| |||||||| ||||| ||| ||| Sbjct 6708 GAGACTCGTGGTGTCTTGAAGATTTTCCTTGAGAACGT 6745 >seq41 Length=15714 Score = 91.5 bits (100), Expect = 2e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| || || |||||||| || |||||||| || ||||||||| |||| Sbjct 4556 AGGCATAACGAAGCCTGCCATTCGTCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTC 4497 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| || |||| |||| ||| ||||||||||||| Sbjct 4496 TGGTCTTATCTACGAGGAGACCCGTGGTGTCCTGAAGATCTTCCT 4452 >seq6254 Length=50532 Score = 87.8 bits (96), Expect = 3e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 16468 CCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGT 16527 || ||| || || ||||| ||||| |||||||| || |||||||| || || || ||| | Sbjct 18122 CCTAGGCATAACGAAGCCTGCTATTCGTCGTCTCGCCCGTCGTGGCGGTGTTAAACGTAT 18063 Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| | |||| ||||||| |||| ||| | ||||||||||| Sbjct 18062 CTCTGGTCTTATCTACGAAGAGACCCGTGGTGTCCTCAAGATCTTCCT 18015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069126258599