Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2220 174 2e-38 seq4642 100 4e-16 >seq2220 Length=173857 Score = 174 bits (192), Expect = 2e-38 Identities = 365/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| |||||||| | ||| || |||||||| || || | ||| || ||||| | || Sbjct 65260 GTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCC 65201 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||||||| ||||| ||||| || ||||| || || ||||||||||| || || || || Sbjct 65200 ACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGC 65141 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGC 33494 |||||| |||| |||| | | ||| ||||| |||||| | || Sbjct 65140 AGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGC 65081 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| || ||||| || || || || | ||||| |||| || ||| | | Sbjct 65080 CCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCG 65021 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||||| ||| || | || ||||| | || ||| | || ||||| ||||| Sbjct 65020 CTCATTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTT 64961 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || || || || || ||||| || |||| ||| || | |||||| || || | | Sbjct 64960 CTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGA 64901 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 ||| || || ||| ||| ||||| ||||| ||||| || || || || || || || Sbjct 64900 AAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAAC 64841 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 33791 |||| || |||| ||| | || |||| | ||||||| || | || || | Sbjct 64840 ATGTGAGATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGT 64781 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 || | ||| | |||||| | |||||||| || ||||| || ||||| ||||||||||| Sbjct 64780 GGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCA 64721 Query 33852 GAT 33854 || Sbjct 64720 AAT 64718 >seq4642 Length=14046 Score = 100 bits (110), Expect = 4e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA---GCTAGAC 63596 ||||||||||||||||||||| ||||| |||| || | || || ||| Sbjct 10242 GTGTCATAGATACCCTCTATGGAGTCATCTTTCATACAAACCAAGAAGCATGAGCTT--- 10298 Query 63597 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63656 | ||| || || ||| || |||||||||| || || || |||||||| || | | Sbjct 10299 AGTTGCGGATGAGGAGTGCCAGCATTAAATAGAGTTGGCGACGCGTGCGTGAAGTAACGT 10358 Query 63657 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63716 ||||| | || |||||||||||||| | ||| |||||| | || || || ||| Sbjct 10359 TCAGACATAAGGTTGTACGTCTCAATGACGCTGTCGATATCCTGCTTGTGGATGCCCACT 10418 Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 ||||||||||| | |||||| ||||| | ||| Sbjct 10419 GCGACACGCATGATCATGTGTTGAGGACGTTC 10450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622895472021880