Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4642 118 3e-21 seq4145 84.2 6e-11 seq2220 84.2 6e-11 >seq4642 Length=14046 Score = 118 bits (130), Expect = 3e-21 Identities = 215/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATTGTTGA 363449 ||||| | ||||| | ||| || ||||| |||| | |||||||| | ||| || Sbjct 10507 TTCGGGTTCAAGACCCTTGAGCGGTCGTACCT-TCTCAGGATCAATGGGCGTGTTGCCGA 10449 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 ||| || || || ||| | |||||||| || | || ||||| | |||| | || Sbjct 10448 ACGTCCTCAACACATGATCATGCGTGTCGCAGTGGGCATCCACAAGCAGGATATCGACAG 10389 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAAT 363569 || ||||| || || || ||| | || ||| ||||||||||| ||||||| | Sbjct 10388 CGTCATTGAGACGTACAACCTTATGTCTGAACGTTACTTCACGCACGCGTCGCCAACTCT 10329 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | |||||||| |||| | |||| || | || ||||| | | ||||| || Sbjct 10328 ATTTAATGCTGGCACTCCTCATCCGCAACTAAGCTCATGCTTCTTGGTTTGTATGAAAGA 10269 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 || ||||| |||||||||| ||||||||| |||| |||||| | || ||||| || Sbjct 10268 TGACTCCATAGAGGGTATCTATGACACACTCAAGAGTTGTGCCATGATCAGCAAGACCGC 10209 Query 363690 AGGCGGAATTGG 363701 ||| |||||||| Sbjct 10208 AGGTGGAATTGG 10197 >seq4145 Length=52608 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 65836 TCGGCATACTTAAACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTG 65895 ||| | ||| |||||| || | ||| ||| ||| || | ||| |||||||| | Sbjct 44376 TCGCCGTACACAAACTGAACAAGATCTCCAAGTGAGTTGCGCACCGTGCCGTCATAGTGA 44317 Query 65896 CACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTTGCAGTT 65955 ||| || || |||||| ||||||| |||||||||||| || | | ||| || Sbjct 44316 ACCATGACGTCCTCCAGTGCCTTGACAAGACGACGCTGGATGTACCCGGTTTCTGCTGTC 44257 Query 65956 TTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAAAACTC 66011 || || || ||||||| ||||||||| | || | ||| ||| ||||||||||| Sbjct 44256 TTGACGGCAGTATCAATGAGACCTTCTCTTCCAGCCATAGCATGGAAGAAAAACTC 44201 >seq2220 Length=173857 Score = 84.2 bits (92), Expect = 6e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 22750 CCAGTAAGTCTCATTGGTATCAATGCCGAATCA-ATGAGTACATATATTAAATTTGTTGC 22808 || || |||||| ||||||| ||||| || || ||| || ||||||| ||||||| || Sbjct 65431 CCGGTCAGTCTCGTTGGTATGAATGC-GACTCTGATGCGTCAATATATTGAATTTGTCGC 65489 Query 22809 AGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGA 22868 || ||||| |||| || || || | | ||| || || | ||||||||||| Sbjct 65490 CGACCGTCTTCTAATATCGCTGGGCAACGACAAGTTCTACAATTCCACCAATCCATTTGA 65549 Query 22869 ATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGA 22928 | ||||| | ||||| | |||||||||| |||||||| || || | ||| ||| Sbjct 65550 TTTTATGGACATGATTTCTATGCAAGGAAAGACAAATTTCTTTGAGAAGCGCGTTTCTGA 65609 Query 22929 ATA 22931 ||| Sbjct 65610 ATA 65612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303242667094826