Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4212 100 3e-16 seq6241 86.0 6e-12 >seq4212 Length=20478 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || || ||||| || || ||||| ||||| |||||||| || || | Sbjct 2332 CTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAA 2273 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | ||||||||| ||||| ||||| || || ||||| || ||| ||||| | Sbjct 2272 GATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2213 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || || | ||||| | || | |||| ||||||||| || || || || || Sbjct 2212 GTCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGAC 2153 Query 131223 GAAAATCTGCATG 131235 ||||||||||||| Sbjct 2152 GAAAATCTGCATG 2140 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | |||| || |||||||| ||||||||||| ||| Sbjct 2140 GCCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 2081 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || ||||||||||| ||| |||| | ||||||||||| ||||| Sbjct 2080 AAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2021 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| ||| ||| | | || | || || | ||||| | Sbjct 2020 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCAC 1961 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || ||||| |||||||| Sbjct 1960 TTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||| ||||| || || ||||| |||||| | Sbjct 1911 CCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGAC 1852 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| | ||||| ||||| ||||| Sbjct 1851 AGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGA 1792 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | || || | ||||| | Sbjct 1791 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCACC 1732 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | |||||| || || || || || || || ||||||||| || Sbjct 1731 TCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGCCT 1681 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| || || || | ||| ||||||||||| |||||||||||| Sbjct 1684 GCCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGA 1625 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| || |||||||| ||| |||| | |||||||||||| || || Sbjct 1624 GAGTGTCCGACCATCCTCAAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGTGG 1565 Query 131127 GAT 131129 || Sbjct 1564 AAT 1562 >seq6241 Length=43505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | || || |||||||| |||||||| ||||| Sbjct 25935 CCACCACGGAGGCGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTA 25876 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| |||||| |||| | |||||||||||| || ||| Sbjct 25875 AGAGTACGGCCATCCTCGAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGG 25816 Query 131128 AT 131129 || Sbjct 25815 AT 25814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471973605237120