Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq37 140 2e-28 seq4212 105 4e-18 seq99 84.2 1e-11 >seq37 Length=3975 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1254 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1313 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1314 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1348 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3275 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3334 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 3335 GCCTGTATTTAGCTTTA 3351 >seq4212 Length=20478 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| || || | || || ||||||||||| || |||||||| || ||| Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || ||||||||||| || || || || ||||| | ||| Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||| || ||| ||||| | || || ||| || || Sbjct 2247 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACC 2188 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| ||||||||||| | ||| || ||||| ||||||||| Sbjct 2187 TCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140 >seq99 Length=7420 Score = 84.2 bits (92), Expect = 1e-11 Identities = 207/309 (67%), Gaps = 4/309 (1%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGC-GCATCTGCGCCAAGGTCGAGGGT 6245 |||| | ||| ||||||||||||| ||||||| | ||| | |||| | ||||| Sbjct 2544 ATGTCGATGACAAGTTCTACCGCTACCGCATGCCGCTTCTTCT-CACCAAAATTGAGGGG 2486 Query 6246 AAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGA 6305 || || |||||||| ||||| ||| | |||||| | || |||||| || | Sbjct 2485 AAAGGCAACGGTATCAAAACTGTCGTCCCTAACATGTCCGATGTCGCTCGTGCCTTATCT 2426 Query 6306 CGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTT 6365 |||||| |||| ||||| || |||| ||||| || || || || || ||||| || Sbjct 2425 CGCCCTCCCACGTACCCCACCAAATTCTTCGGTTGTGAGCTCGGTGCACAGACCTCCTTC 2366 Query 6366 GATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425 || | || || || || | |||||| || || | ||| | || | || | || Sbjct 2365 GACGAGAAGAATGACCGATACATCGTCAATGGCGCTCATGATGCTTCTCGTCTCCGTGAA 2306 Query 6426 TTACTTGACGGCTTTATTCG-CAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 | || ||| |||| ||| ||| ||||| || || || |||| | ||||| || || Sbjct 2305 CTCCTCGAC-ACTTTCATCGACAAATTTGTTCTCTGCCGTTCATGCAAGAACCCTGAAAC 2247 Query 6485 CGAGCTTAT 6493 || || || Sbjct 2246 AGACCTGAT 2238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334920082151333