Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq37 140 2e-28
seq4212 105 4e-18
seq99 84.2 1e-11
>seq37
Length=3975
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1254 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1313
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1314 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1348
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 3275 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3334
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||| |||
Sbjct 3335 GCCTGTATTTAGCTTTA 3351
>seq4212
Length=20478
Score = 105 bits (116), Expect = 4e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| || || | || || ||||||||||| || |||||||| || |||
Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || ||||||||||| || || || || ||||| | |||
Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| ||| || ||| ||||| | || || ||| || ||
Sbjct 2247 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACC 2188
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || ||||| ||||||||||| | ||| || ||||| |||||||||
Sbjct 2187 TCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140
>seq99
Length=7420
Score = 84.2 bits (92), Expect = 1e-11
Identities = 207/309 (67%), Gaps = 4/309 (1%)
Strand=Plus/Minus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGC-GCATCTGCGCCAAGGTCGAGGGT 6245
|||| | ||| ||||||||||||| ||||||| | ||| | |||| | |||||
Sbjct 2544 ATGTCGATGACAAGTTCTACCGCTACCGCATGCCGCTTCTTCT-CACCAAAATTGAGGGG 2486
Query 6246 AAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGA 6305
|| || |||||||| ||||| ||| | |||||| | || |||||| || |
Sbjct 2485 AAAGGCAACGGTATCAAAACTGTCGTCCCTAACATGTCCGATGTCGCTCGTGCCTTATCT 2426
Query 6306 CGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTT 6365
|||||| |||| ||||| || |||| ||||| || || || || || ||||| ||
Sbjct 2425 CGCCCTCCCACGTACCCCACCAAATTCTTCGGTTGTGAGCTCGGTGCACAGACCTCCTTC 2366
Query 6366 GATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425
|| | || || || || | |||||| || || | ||| | || | || | ||
Sbjct 2365 GACGAGAAGAATGACCGATACATCGTCAATGGCGCTCATGATGCTTCTCGTCTCCGTGAA 2306
Query 6426 TTACTTGACGGCTTTATTCG-CAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
| || ||| |||| ||| ||| ||||| || || || |||| | ||||| || ||
Sbjct 2305 CTCCTCGAC-ACTTTCATCGACAAATTTGTTCTCTGCCGTTCATGCAAGAACCCTGAAAC 2247
Query 6485 CGAGCTTAT 6493
|| || ||
Sbjct 2246 AGACCTGAT 2238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334920082151333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |