Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2220 156 5e-33 seq4642 82.4 1e-10 >seq2220 Length=173857 Score = 156 bits (172), Expect = 5e-33 Identities = 357/536 (67%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 |||||||| | ||| || | |||||| || || | ||| || ||||| | ||||||||| Sbjct 65253 CCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTT 65194 Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 || ||||| ||||| || || || || || |||||||| || || || || || ||||| Sbjct 65193 TTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAA 65134 Query 32802 GCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCG 32858 |||| |||| | | ||| ||||| |||||| | ||||| || Sbjct 65133 GCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGCCCAGTCT 65074 Query 32859 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 32918 ||||| || || || || | |||||| |||| || ||| | | ||||| Sbjct 65073 GCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCGCTCATTG 65014 Query 32919 CTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 32978 ||| || | || || || | || ||| | || ||||| ||||| || || Sbjct 65013 ACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATC 64954 Query 32979 GCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33038 ||||| || ||||| ||||||| ||| || | |||||| || || | |||| || Sbjct 64953 ATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGC 64894 Query 33039 TCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 33098 || | | ||| ||||| ||||| ||||| || || || || || || |||||| Sbjct 64893 TCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAG 64834 Query 33099 ATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTTAGATATA 33155 || |||| ||| | || |||| | ||||||| || | || || | || | | Sbjct 64833 ATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGA 64774 Query 33156 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 |||| |||||| | |||||||| || ||||| || ||||| ||||| ||||| || Sbjct 64773 TCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 Score = 129 bits (142), Expect = 7e-25 Identities = 368/562 (65%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || || || ||| ||| | |||||| || | || || | |||||||| || || Sbjct 62997 CAAGCAAGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGT 63056 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||| || ||||| || || || || || ||||| || ||||| ||||| || ||||| || Sbjct 63057 GAGACCAGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAA 63116 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGCTG-TC 32833 ||| || || || || || || || || | | || || || | || || || || Sbjct 63117 GAAGATACCCTCGACGGCAGCGAATGCTACCAATCGTTCAGCAAAGGTGGAACGTTGATC 63176 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | ||||||||| | ||||| |||||||| || || || || || ||||| || || Sbjct 63177 AGTTATCCACTTCAGTGCCCAGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCCATGGC 63236 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 || || || || | || | ||| || | ||| || || || | || || Sbjct 63237 ATCGAAAAGGTATTCGCGTTGTCTGGGATCCTTGATATAGGTGTCGATGAGGAGTGAGTA 63296 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | || || ||||| || || || ||||| || ||||||||||| | || |||| Sbjct 63297 GGTCTCAGAGTGAATATTCTCCATCATAATTTGGAAACCGTAGAAGCACCGGGCTTCGGC 63356 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 ||| || || | | || || || | | |||||||| || || || || || Sbjct 63357 GGCCTGAACCTCATTGGAGAAACGCTCAACGAGGTTTTCATTGACGATGCCATCGGATGC 63416 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 33129 || || || || | ||||||| ||| || | |||| || || | || Sbjct 63417 AGCGAAGAAGGCGAGTACATGTGATATGAAGTGGCGCTCGT-TGTCATTGAGACGGTTGG 63475 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 |||| |||| | ||||| || | ||||| || || | ||||| || |||||||| | Sbjct 63476 TCCAGTCATGAACGTCTTTTGAGAGATCCATCTCCTCAGCAGTCCAGAAGGATGCCTCGG 63535 Query 33190 CCTTTTTATACATATTCCAGAT 33211 |||| || ||||| | ||| || Sbjct 63536 CCTTCTTGTACATTTGCCATAT 63557 >seq4642 Length=14046 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || |||||||||| || || || ||||| || || | |||||| | || || Sbjct 10313 AGTGCCAGCATTAAATAGAGTTGGCGACGCGTGCGTGAAGTAACGTTCAGACATAAGGTT 10372 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 |||||||||||| | ||| |||||| | || || || |||||||||||||| | Sbjct 10373 GTACGTCTCAATGACGCTGTCGATATCCTGCTTGTGGATGCCCACTGCGACACGCATGAT 10432 Query 63586 CATGTGCTGAGGTCTTTC 63603 |||||| ||||| | ||| Sbjct 10433 CATGTGTTGAGGACGTTC 10450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633579384782800