Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 116 3e-21
seq1236 89.7 4e-13
>seq4212
Length=20478
Score = 116 bits (128), Expect = 3e-21
Identities = 150/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || ||| ||||||| | || ||||||||||||
Sbjct 1685 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCT 1744
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || ||||| |||||||
Sbjct 1745 GACACCATCGA--CAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACC 1802
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || || || ||||| || | || |||| ||| || || |||||| |
Sbjct 1803 AACAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATA 1862
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
| || || ||||| || || || ||
Sbjct 1863 ACATCCAGAAAGAGTCTACCCTTCA 1887
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | |||||| | |||||||||||||||
Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| ||||| || || ||||| || |||||
Sbjct 1973 GACACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 2032
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || |||||||| || | ||||| | ||| ||| | ||| |||||
Sbjct 2033 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAAC 2092
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
||||| || || ||||| |||||
Sbjct 2093 ATTCAGAAGGAGTCCACTCTACA 2115
>seq1236
Length=761
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/162 (73%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || |||||| ||||||| | || || ||||| ||
Sbjct 160 ATGCAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCC 101
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| || || ||| ||| ||| || || || || ||||| || ||||
Sbjct 100 GACACTATCGA--CAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACC 43
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATC 25158
|||| || | || ||||| || || || || ||||||| ||
Sbjct 42 AACAACGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433292917088045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |