Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4212 116 3e-21 seq1236 89.7 4e-13 >seq4212 Length=20478 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| ||||||| | || |||||||||||| Sbjct 1685 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCT 1744 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || ||||| ||||||| Sbjct 1745 GACACCATCGA--CAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACC 1802 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || || ||||| || | || |||| ||| || || |||||| | Sbjct 1803 AACAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATA 1862 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || ||||| || || || || Sbjct 1863 ACATCCAGAAAGAGTCTACCCTTCA 1887 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | |||||| | ||||||||||||||| Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || ||||| || ||||| Sbjct 1973 GACACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 2032 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||| | ||| ||| | ||| ||||| Sbjct 2033 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAAC 2092 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || ||||| ||||| Sbjct 2093 ATTCAGAAGGAGTCCACTCTACA 2115 >seq1236 Length=761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || |||||| ||||||| | || || ||||| || Sbjct 160 ATGCAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCC 101 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| ||| ||| || || || || ||||| || |||| Sbjct 100 GACACTATCGA--CAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACC 43 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATC 25158 |||| || | || ||||| || || || || ||||||| || Sbjct 42 AACAACGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433292917088045