Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2220 197 2e-45
>seq2220
Length=173857
Score = 197 bits (218), Expect = 2e-45
Identities = 385/564 (68%), Gaps = 11/564 (2%)
Strand=Plus/Plus
Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148
||||| ||||||||||| || | ||| || || || || | ||| ||| ||| ||
Sbjct 62998 AAGCAAGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTG 63057
Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208
| ||| || | || || |||||||||||||| || || || ||||| ||||| ||
Sbjct 63058 AGACCAGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAG 63117
Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA---TTA 93265
|| ||||| || ||||| || ||||| || | ||||| ||||| | |||| | |
Sbjct 63118 AAGATACCCTCGACGGCAGCGAATGCTACCAATCGTTCAGCAAAGGT---GGAACGTTGA 63174
Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325
| ||||| || | ||||| ||||| || ||||| || || | || || ||
Sbjct 63175 TCAGTTATCCACTTCAGTGCCCAGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCCATG 63234
Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGA-ATCTCGTATGTATGTATCGATTAACAGAGA 93384
|| | || ||||| || || | ||| | ||| || || || ||||| | || ||
Sbjct 63235 GCATCGAAAAGGTATTCGCGTT-GTCTGGGATCCTTGATATAGGTGTCGATGAGGAGTGA 63293
Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444
|| | ||||| || | ||||||||| ||||||||| |||||||| || | |||||
Sbjct 63294 GTAGGTCTCAGAGTGAATATTCTCCATCATAATTTGGAAACCGTAGAAGCACCGGGCTTC 63353
Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504
| | ||| || || | || || | ||| ||||| ||||||||||| || ||||||||
Sbjct 63354 GGCGGCCTGAACCTCATTGGAGAAACGCTCAACGAGGTTTTCATTGACGATGCCATCGGA 63413
Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTT 93561
||| || || || || | || ||| ||| || || ||| | || || | | ||
Sbjct 63414 TGCAGCGAAGAAGGCGAGTACATGTGATATGAAGTGGCGCTCGTTGTCATTGAGACGGTT 63473
Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621
||| || | |||||||| ||||| | || || ||||||| || ||||| ||
Sbjct 63474 GGTCCAGTCATGAACGTCTTTTGAGAGATCCATCTCCTCAGCAGTCCAGAAGGATGCCTC 63533
Query 93622 TGCTTTTTTGTACATATCCCATAT 93645
|| || |||||||| | ||||||
Sbjct 63534 GGCCTTCTTGTACATTTGCCATAT 63557
Score = 145 bits (160), Expect = 8e-30
Identities = 336/504 (67%), Gaps = 17/504 (3%)
Strand=Plus/Minus
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
||||| | || ||| || || |||||||| ||||| || || ||| ||| ||||| ||
Sbjct 65214 CCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAG 65155
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT 93270
|| || || || || ||||| || || | || || || || || || || |
Sbjct 65154 ATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAA---TGTGGCATGTTTGTCA 65098
Query 93271 GAT--CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328
||| |||| ||| ||||| || || || ||||| |||| | || || ||
Sbjct 65097 GATATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCA 65038
Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388
| || || | | ||||| | ||| ||| || ||||| | || |||||
Sbjct 65037 TCGAAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAG 64978
Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448
| || ||||||| ||||| || |||||||| ||||| || |||| |||||| |
Sbjct 64977 GTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCA 64918
Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508
||||| || || | ||||| | ||| || ||||| ||||||||||| || ||||||||
Sbjct 64917 ATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCA 64858
Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT-------T 93561
|| || ||||| || | ||| || ||||| |||| || ||| | |
Sbjct 64857 GCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCAT----TTGAAGTTAGGCGGGT 64802
Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621
|| ||| ||| | || | || ||||| | ||||||| | |||||||| || || ||
Sbjct 64801 ATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTC 64742
Query 93622 TGCTTTTTTGTACATATCCCATAT 93645
|||||||||||||| | ||| ||
Sbjct 64741 GGCTTTTTTGTACATGTTCCAAAT 64718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556814559671320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |