Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2220 197 2e-45 >seq2220 Length=173857 Score = 197 bits (218), Expect = 2e-45 Identities = 385/564 (68%), Gaps = 11/564 (2%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| ||||||||||| || | ||| || || || || | ||| ||| ||| || Sbjct 62998 AAGCAAGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTG 63057 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | || || |||||||||||||| || || || ||||| ||||| || Sbjct 63058 AGACCAGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAG 63117 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA---TTA 93265 || ||||| || ||||| || ||||| || | ||||| ||||| | |||| | | Sbjct 63118 AAGATACCCTCGACGGCAGCGAATGCTACCAATCGTTCAGCAAAGGT---GGAACGTTGA 63174 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | ||||| || | ||||| ||||| || ||||| || || | || || || Sbjct 63175 TCAGTTATCCACTTCAGTGCCCAGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCCATG 63234 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGA-ATCTCGTATGTATGTATCGATTAACAGAGA 93384 || | || ||||| || || | ||| | ||| || || || ||||| | || || Sbjct 63235 GCATCGAAAAGGTATTCGCGTT-GTCTGGGATCCTTGATATAGGTGTCGATGAGGAGTGA 63293 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 || | ||||| || | ||||||||| ||||||||| |||||||| || | ||||| Sbjct 63294 GTAGGTCTCAGAGTGAATATTCTCCATCATAATTTGGAAACCGTAGAAGCACCGGGCTTC 63353 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | | ||| || || | || || | ||| ||||| ||||||||||| || |||||||| Sbjct 63354 GGCGGCCTGAACCTCATTGGAGAAACGCTCAACGAGGTTTTCATTGACGATGCCATCGGA 63413 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTT 93561 ||| || || || || | || ||| ||| || || ||| | || || | | || Sbjct 63414 TGCAGCGAAGAAGGCGAGTACATGTGATATGAAGTGGCGCTCGTTGTCATTGAGACGGTT 63473 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 ||| || | |||||||| ||||| | || || ||||||| || ||||| || Sbjct 63474 GGTCCAGTCATGAACGTCTTTTGAGAGATCCATCTCCTCAGCAGTCCAGAAGGATGCCTC 63533 Query 93622 TGCTTTTTTGTACATATCCCATAT 93645 || || |||||||| | |||||| Sbjct 63534 GGCCTTCTTGTACATTTGCCATAT 63557 Score = 145 bits (160), Expect = 8e-30 Identities = 336/504 (67%), Gaps = 17/504 (3%) Strand=Plus/Minus Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 ||||| | || ||| || || |||||||| ||||| || || ||| ||| ||||| || Sbjct 65214 CCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAG 65155 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT 93270 || || || || || ||||| || || | || || || || || || || | Sbjct 65154 ATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAA---TGTGGCATGTTTGTCA 65098 Query 93271 GAT--CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 ||| |||| ||| ||||| || || || ||||| |||| | || || || Sbjct 65097 GATATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCA 65038 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 | || || | | ||||| | ||| ||| || ||||| | || ||||| Sbjct 65037 TCGAAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAG 64978 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 | || ||||||| ||||| || |||||||| ||||| || |||| |||||| | Sbjct 64977 GTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCA 64918 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 ||||| || || | ||||| | ||| || ||||| ||||||||||| || |||||||| Sbjct 64917 ATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCA 64858 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT-------T 93561 || || ||||| || | ||| || ||||| |||| || ||| | | Sbjct 64857 GCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCAT----TTGAAGTTAGGCGGGT 64802 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 || ||| ||| | || | || ||||| | ||||||| | |||||||| || || || Sbjct 64801 ATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTC 64742 Query 93622 TGCTTTTTTGTACATATCCCATAT 93645 |||||||||||||| | ||| || Sbjct 64741 GGCTTTTTTGTACATGTTCCAAAT 64718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556814559671320