Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4212 105 6e-18 seq1236 87.8 2e-12 >seq4212 Length=20478 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || ||||| |||| || || ||||| | | Sbjct 1685 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCT 1744 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||||||||| || || ||| Sbjct 1745 GACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 1804 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| || || | |||||||| ||| Sbjct 1805 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAAC 1864 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 1865 ATCCAGAAAGAGTCTACC 1882 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || |||||||| | || | || ||||| | | Sbjct 2141 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCA 2200 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| |||||||||||||| || || ||||| Sbjct 2201 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 2260 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || ||| | |||||| ||||| | || || ||||| Sbjct 2261 CAGCGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAAT 2320 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 2321 ATCCAGAAGGA 2331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| | |||||||| | | Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || |||||||||||||| ||||| ||||| || Sbjct 1973 GACACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 2032 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | || || || || | ||||| |||||| Sbjct 2033 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAAC 2092 Query 22399 ATTCAAAAAGAATCCACCATACA 22421 ||||| || || ||||| |||| Sbjct 2093 ATTCAGAAGGAGTCCACTCTACA 2115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 ||||||||||||| || || ||||| || || || ||||| || | |||||| || | Sbjct 1560 GTATTCCACCCGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAACTTGAGGATGGTCGGA 1619 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCG 22441 | |||||||||||||||| ||||| || || ||| | || || || ||||| | || | Sbjct 1620 CACTCTCCGATTACAACATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTCCGTG 1679 Query 22442 GAGG 22445 |||| Sbjct 1680 GAGG 1683 >seq1236 Length=761 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || |||||||| |||| | || || || | || Sbjct 160 ATGCAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCC 101 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || ||| || || || |||||||||||||| || || ||| Sbjct 100 GACACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAA 41 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 ||||| || || ||||| || || ||||| || ||| Sbjct 40 CAACGCCTCATCTTTGCTGGAAAGCAGTTGGAAGAT 5 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 |||| |||||||| ||||| || || || || || ||||| ||| | |||||| |||| Sbjct 285 GTATCCCACCCGACCAACAGCGCCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCA 226 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCG 22441 | |||||||||||||||| || || || || ||| | || | || ||||| | || | Sbjct 225 CGCTCTCCGATTACAACATCCAGAAGGAGTCTACCCTTCACCTTGTCTTGCGTCTCCGTG 166 Query 22442 GAGG 22445 |||| Sbjct 165 GAGG 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419694018165295