Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq96 111 3e-19 seq2220 93.3 9e-14 >seq96 Length=91382 Score = 111 bits (122), Expect = 3e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||| |||||||||||||| |||||| || | ||||| || | || || Sbjct 11781 TGTCAGGTGGATGGAAGATGAAGCTTGCCCTCGCTAGGGCCATGCTTTTCAAGGCTGACA 11722 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 |||| || ||||||||||| |||||||| |||| |||||| || ||||| | | Sbjct 11721 TCCTTCTCCTTGATGAGCCTACCAACCATTTGGATGTTGTCAACGTTGCTTGGCTCGAGA 11662 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 |||||| ||| |||||| | |||| |||||||||| |||||||| |||||| Sbjct 11661 ACTACCTTGTCAGCTTGAAGACTTGCACTTCTATCATTGTCTCCCACGACTCCAGCTTCC 11602 Query 279886 T 279886 | Sbjct 11601 T 11601 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 ||| ||||| ||||| |||| | ||||| || || || |||| |||||||| | || Sbjct 12137 AGGCGAGGACTTGTGTAACTGCCAGTTCTCCCTTGCCTACGGTGCCAAGATTCTCTTGAA 12078 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | | | |||| | ||||||||||| |||| || |||||| |||| || || | Sbjct 12077 CACCGCTACCCTCCGCCTCAAGCGTGGCCACCGTTACGGTCTCTGCGGTAAGAACGGTAC 12018 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 ||| ||| || || ||||||||||| | ||||||||| | || || || ||| | | Sbjct 12017 GGGCAAGTCAACCCTCATGCGCGCCATCACCAACGGTCAGGTTGAGGGCTTCCCTTCCCC 11958 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562 ||||| | || | ||||| |||||||||||||| Sbjct 11957 TGACGAGGTTCGCACCTTCTATGTCGAGCACGACATCGA 11919 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || ||||| ||| | || ||||| |||||| |||| |||| | || || | Sbjct 11311 GTCCTCGGTCCCAACGGTTCCGGCAAGTCCACCCTAGTCAAGCTCCTCATCGGTGACATG 11252 Query 280233 CAGGCCACTGAGGGGTCCG---TTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 | ||| |||| | |||||||||| || ||| || || | |||||| ||| Sbjct 11251 GAACCCAACAAGGGTGGTGAAATTTGGAAGCACCCTAACTTGGTCATCGGTTACGTTGCT 11192 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| ||||||||||| || ||||||| |||| ||||||| | ||||| | Sbjct 11191 CAGCACGCCTTCCACCACATTGACCACCACCTCGACAAGACTCCTCTGGAGTACATGCTC 11132 Query 280350 TGGCGCTATGCAAGTGGGCAGGATCTGGA 280378 ||||| || | ||| ||||| |||| Sbjct 11131 TGGCGTTACCAGACTGGTGAGGATTTGGA 11103 >seq2220 Length=173857 Score = 93.3 bits (102), Expect = 9e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 251544 ATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCAT 251603 ||| || |||||||| |||||||| || | |||||| | || ||||| | ||||| Sbjct 62665 ATAATCTGATACACGCTTCTCGAAGAAGTTCGTCTTGCCTTGTAGCGAGATCATGTCCAT 62724 Query 251604 GAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCG 251663 |||||||||||| || || | |||||| ||| | || || | || | | ||| Sbjct 62725 GAAGTCGAAGGGATTGGTAGAGTTGTACACCTTCTCGTTACCCAGCGACACTAGTAAGCG 62784 Query 251664 GTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 |||||| |||||||| | ||||| | ||| || | | |||||||||||| Sbjct 62785 GTCTGCGACAAACTCGATGTACTGGCGCATGAGCTTGGCGTTCATGCCAAT 62835 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||| || || ||||||| ||||||||| | | || |||||||| | || Sbjct 63015 GTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACC 63074 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 || ||| ||||||||||||| | |||||| |||||||| | | ||||||||| Sbjct 63075 GCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAGAAGATACCCTCGAC 63131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027749317276763