Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq96 111 3e-19
seq2220 93.3 9e-14
>seq96
Length=91382
Score = 111 bits (122), Expect = 3e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765
|||| ||||| |||||||||||||| |||||| || | ||||| || | || ||
Sbjct 11781 TGTCAGGTGGATGGAAGATGAAGCTTGCCCTCGCTAGGGCCATGCTTTTCAAGGCTGACA 11722
Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825
|||| || ||||||||||| |||||||| |||| |||||| || ||||| | |
Sbjct 11721 TCCTTCTCCTTGATGAGCCTACCAACCATTTGGATGTTGTCAACGTTGCTTGGCTCGAGA 11662
Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885
|||||| ||| |||||| | |||| |||||||||| |||||||| ||||||
Sbjct 11661 ACTACCTTGTCAGCTTGAAGACTTGCACTTCTATCATTGTCTCCCACGACTCCAGCTTCC 11602
Query 279886 T 279886
|
Sbjct 11601 T 11601
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403
||| ||||| ||||| |||| | ||||| || || || |||| |||||||| | ||
Sbjct 12137 AGGCGAGGACTTGTGTAACTGCCAGTTCTCCCTTGCCTACGGTGCCAAGATTCTCTTGAA 12078
Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463
| | | |||| | ||||||||||| |||| || |||||| |||| || || |
Sbjct 12077 CACCGCTACCCTCCGCCTCAAGCGTGGCCACCGTTACGGTCTCTGCGGTAAGAACGGTAC 12018
Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523
||| ||| || || ||||||||||| | ||||||||| | || || || ||| | |
Sbjct 12017 GGGCAAGTCAACCCTCATGCGCGCCATCACCAACGGTCAGGTTGAGGGCTTCCCTTCCCC 11958
Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562
||||| | || | ||||| ||||||||||||||
Sbjct 11957 TGACGAGGTTCGCACCTTCTATGTCGAGCACGACATCGA 11919
Score = 91.5 bits (100), Expect = 3e-13
Identities = 146/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | || ||||| ||| | || ||||| |||||| |||| |||| | || || |
Sbjct 11311 GTCCTCGGTCCCAACGGTTCCGGCAAGTCCACCCTAGTCAAGCTCCTCATCGGTGACATG 11252
Query 280233 CAGGCCACTGAGGGGTCCG---TTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
| ||| |||| | |||||||||| || ||| || || | |||||| |||
Sbjct 11251 GAACCCAACAAGGGTGGTGAAATTTGGAAGCACCCTAACTTGGTCATCGGTTACGTTGCT 11192
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349
|||||||| ||||||||||| || ||||||| |||| ||||||| | ||||| |
Sbjct 11191 CAGCACGCCTTCCACCACATTGACCACCACCTCGACAAGACTCCTCTGGAGTACATGCTC 11132
Query 280350 TGGCGCTATGCAAGTGGGCAGGATCTGGA 280378
||||| || | ||| ||||| ||||
Sbjct 11131 TGGCGTTACCAGACTGGTGAGGATTTGGA 11103
>seq2220
Length=173857
Score = 93.3 bits (102), Expect = 9e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 251544 ATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCAT 251603
||| || |||||||| |||||||| || | |||||| | || ||||| | |||||
Sbjct 62665 ATAATCTGATACACGCTTCTCGAAGAAGTTCGTCTTGCCTTGTAGCGAGATCATGTCCAT 62724
Query 251604 GAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCG 251663
|||||||||||| || || | |||||| ||| | || || | || | | |||
Sbjct 62725 GAAGTCGAAGGGATTGGTAGAGTTGTACACCTTCTCGTTACCCAGCGACACTAGTAAGCG 62784
Query 251664 GTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714
|||||| |||||||| | ||||| | ||| || | | ||||||||||||
Sbjct 62785 GTCTGCGACAAACTCGATGTACTGGCGCATGAGCTTGGCGTTCATGCCAAT 62835
Score = 89.7 bits (98), Expect = 1e-12
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903
||||| |||||| || || ||||||| ||||||||| | | || |||||||| | ||
Sbjct 63015 GTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACC 63074
Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960
|| ||| ||||||||||||| | |||||| |||||||| | | |||||||||
Sbjct 63075 GCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAGAAGATACCCTCGAC 63131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027749317276763
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |