Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4212 197 3e-45 seq4763 183 6e-41 seq1236 154 3e-32 seq5382 140 6e-28 seq4824 134 3e-26 seq96 114 2e-20 seq6278 102 2e-16 >seq4212 Length=20478 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | |||||| |||||||| || || ||||| || ||||| Sbjct 2139 CCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAA 2080 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| ||||| | || |||||||| ||| Sbjct 2079 AGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 2020 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| ||||| ||| || |||||||| | || || ||| Sbjct 2019 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACT 1960 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || |||||||||||||||||||| |||||||| Sbjct 1959 TCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || |||||||| ||||||||||||||||| Sbjct 1911 CCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGAC 1852 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | |||||||| || ||| Sbjct 1851 AGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGA 1792 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || ||||||||||| | || || || Sbjct 1791 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCACC 1732 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||||| ||||||||||||||||| || |||||||| Sbjct 1731 TCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1685 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || || || | ||| || ||| ||| || ||||| || || || || Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || || || || || Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||||| ||| || || Sbjct 2247 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACC 2188 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct 2187 TCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141 Score = 122 bits (134), Expect = 2e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || ||||| |||||||| || || ||||| ||||||||||| ||||||||| Sbjct 1683 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGAG 1624 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||||| ||||| || | ||||| || ||||| ||||| | || |||||||||||| Sbjct 1623 AGTGTCCGACCATCCTCAAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGTGGA 1564 Query 68355 AT 68356 || Sbjct 1563 AT 1562 Score = 96.9 bits (106), Expect = 6e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420 ||||||||||| ||||| ||||||||| |||||||| || | || || || || | | Sbjct 1505 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCAGAGGACTCAACCTCGAGG 1446 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| |||||||| || |||||||| Sbjct 1445 GTGATGGTTTTGCCGGTGAGTGTCTTGACAAAAATCTGCAT 1405 >seq4763 Length=6291 Score = 183 bits (202), Expect = 6e-41 Identities = 351/513 (68%), Gaps = 6/513 (1%) Strand=Plus/Minus Query 268284 CATGGCCCCAATCGCGCTTTGCG--TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCC 268341 |||| ||||| || | |||||| || ||||| |||||| ||| ||| | ||||||||| Sbjct 3303 CATGTCCCCAGTCTC--TTTGCGCATCGATGTTACCGAGGTACAAGCAGTGCTGCTTGCC 3246 Query 268342 GAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAG 268401 || | | ||||| | | | ||||| | || ||||| ||| || || Sbjct 3245 GACGCTGATATCTGCAACGGCCCTGCTAATTTTCCTCGTGACGAAGGTCCTCCCTCGCCT 3186 Query 268402 AGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTA 268461 ||||||||||||||||| || || || || ||||| |||| || |||||||| ||||| Sbjct 3185 CGGGCTCTCGTGGTTGAAAAGAATTCCATTACACGCATACATTCCGTATGCCTCGCGGTA 3126 Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521 ||| || |||||||||| ||| ||| ||||| ||||||| || |||| ||| Sbjct 3125 GTTAACCGTAATCCAGTATGCGTACAGCTTGGCAACGCCGTACGGGCTGCGAGGATAGAA 3066 Query 268522 GGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGC 268581 |||||||| | || ||| | || |||||| || ||||||| |||||||| || Sbjct 3065 AGGCGTCGTCTCGCTCTGTGGGGTCTCAACGACTTTTCCGTAGAGCTCCGAGGTCGAGGC 3006 Query 268582 TTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAG 268641 ||||||||| || || | || || | | ||||| || ||||| | || || Sbjct 3005 TTGGTAGAAGCGCGTATGCTTGTGAAGCCCAACGGTGCGGATGGCGTCGAGGAGGCGCAG 2946 Query 268642 AGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATG 268701 || || | |||||| || || || || || || | ||||||||| || |||| ||| || Sbjct 2945 GGTACCAAGGCCATCGACATCGGCGGTGTATTCTGCCATCTCGAAAGAGACCTTGACGTG 2886 Query 268702 GCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC-ACGATCTTCACGA 268760 || || || || || || | ||| | || || || || | || | |||| Sbjct 2885 CGATTGAGCACCAAGATTGTAGATCTC-TGAGGGGAGAACTTGGGCGAGGACGTAGACGA 2827 Query 268761 GGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 |||| || ||||| || || |||||||||| Sbjct 2826 GGTTGGTGCTGTCGGATAGATCACCGTAGTGCA 2794 >seq1236 Length=761 Score = 154 bits (170), Expect = 3e-32 Identities = 129/158 (82%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| |||||||| || || || ||||| | ||||||||| || ||||| || ||| Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||||||||| || ||||| ||||| | ||| ||||| ||||| ||| Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||||||||| ||||| || |||||||| Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160 Score = 109 bits (120), Expect = 1e-18 Identities = 186/284 (65%), Gaps = 53/284 (19%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || ||||| || | ||| || || ||||| || |||||||| ||||||||| Sbjct 162 CCTCCACGGAGACGCAAGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAG 221 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG- 68353 || || | ||||| || | |||||| || ||||| ||||| | |||||||||||||| Sbjct 222 AGCGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGTGGG 281 Query 68354 -------------------------------------------AATG---------CCTT 68361 |||| || | Sbjct 282 ATACTTCAAACACGACTCTCAGCTCGCGAACGCTGACCTAGTAAATGAATACATACCCCT 341 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||||||||||||||| ||||| ||| ||||||||||| | || || || || || | Sbjct 342 CCTTGTCTTGAATCTTGGCCTTAACGTTATCGATGGTGTCAGAGGACTCGACCTCTAATG 401 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||||| || || ||||||||||| ||||| ||||||||| || Sbjct 402 TGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCATTCTG 445 >seq5382 Length=4005 Score = 140 bits (154), Expect = 6e-28 Identities = 277/408 (68%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 268284 CATGGCCCCAATCGCGCTTTGCG--TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCC 268341 |||| ||||| || | |||||| || ||||| |||||| ||| ||| | ||||||||| Sbjct 3701 CATGTCCCCAGTCTC--TTTGCGCATCGATGTTACCGAGGTACAAGCAGTGCTGCTTGCC 3644 Query 268342 GAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAG 268401 || | | ||||| | | | ||||| | || ||||| ||| || || Sbjct 3643 GACGCTGATATCTGCAACGGCCCTGCTAATTTTCCTCGTGACGAAGGTCCTCCCTCGCCT 3584 Query 268402 AGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTA 268461 ||||||||||||||||| ||||| || || ||||| || | || || ||||| ||||| Sbjct 3583 CGGGCTCTCGTGGTTGAAAAGGATTCCATTACACGCATACGTCCCGTACGCCTCGCGGTA 3524 Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521 ||| || |||||||||| ||| ||| || || |||||| || |||| ||| Sbjct 3523 GTTAACCGTAATCCAGTATGCGTACAGCTTGGCGACACCGTACGTGCTGCGAGGATAGAA 3464 Query 268522 GGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGC 268581 ||||| || | || ||| | || |||||| || ||||||| ||| ||||||| Sbjct 3463 AGGCGTGGTCTCGCTCTGTGGGGTCTCGACGACTTTTCCGTAGAGCTCTGAGATCGATGC 3404 Query 268582 TTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAG 268641 ||||||||| || || | || ||| | | |||| || ||||| | | || Sbjct 3403 TTGGTAGAAGCGCGTATGCTTGTGAAGCCCGACGGTACGGACGGCGTCGAGGAGGCACAG 3344 Query 268642 AGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGA 268689 || || |||||| || || || | || || | ||||||||| || Sbjct 3343 GGTACCAGGGCCATCGACATCGGCGATGTATTCTGCCATCTCGAAAGA 3296 >seq4824 Length=32535 Score = 134 bits (148), Expect = 3e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 |||| || || ||||| || | || | ||| || |||||||| || || ||||||||| Sbjct 163 TAATAGCCACCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAA 104 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || ||||| || | |||||||| ||||||||||| ||||| || || | ||||| || Sbjct 103 TCTGAGAGCGTACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCA 44 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 || || |||||||||||||| |||||||| ||||| ||| Sbjct 43 GGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACG 5 >seq96 Length=91382 Score = 114 bits (126), Expect = 2e-20 Identities = 366/559 (65%), Gaps = 28/559 (5%) Strand=Plus/Plus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507 ||||||| ||||||||||| |||||||| || | || || | ||| || |||| Sbjct 11601 AGGAAGCTGGAGTCGTGGGAGACAATGATAGAAGTGCAAGT-CTTCAAGCTGACAAGGTA 11659 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | |||||| || |||||| || |||| ||||| ||||| || || || || || Sbjct 11660 GTTCTCGAGCCAAGCAACGTTGACAACATCCAAATGGTTGGTAGGCTCATCAAGGAGAAG 11719 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 ||||||||| | | || ||||| | | ||| | |||||||| ||||| || || || Sbjct 11720 GATGTCAGCCTTGAAAAGCATGGCCCTAGCGAGGGCAAGCTTCATCTTCCATCCACCTGA 11779 Query 225628 CAGGGAGCCGATTGAAACAGAGTGCTTA----GCT--TCGTCAAAGCCGTACT---CCAG 225678 || | |||||| | |||||| ||| |||| |||||| || ||| Sbjct 11780 CAAGCTGCCGATGGC------GTGCTTCTGACGCTCATCGTTGAAGCCG-ACGGAACCA- 11831 Query 225679 GAGCGTCTGGATAATGCGCTCGGGAGAG-CTGCGAGCGGCAACGTTGGGGTCGGACGAGA 225737 || || | ||||| ||||| | | || || || | | || || || Sbjct 11832 -AGGGTTTCGATAAC---CTCGGCCTCGTCAGCAAG----AATGCGCGAATCAGAAAGGA 11883 Query 225738 GGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCG 225797 | | | | || | | |||| | || | || |||||||| || || || | | Sbjct 11884 TGAATTGAAGGACCGACGTGTCGGCCTCACTGCCATCGATGTCGTGCTCGACATAGAAGG 11943 Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | || | || || ||||||||||| | ||| || || | || || || | | Sbjct 11944 TGCGAACCTCGTCAGGGGAAGGGAAGCCCTCAACCTGACCGTTGGTGATGGCGCGCATGA 12003 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| |||||||| ||||| |||| ||| |||||| | | || ||||||| | Sbjct 12004 GGGTTGACTTGCCCGTACCGTTCTTACCGCAGAGACCGTAACGGTGGCCACGCTTGAGGC 12063 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 |||| | || ||||| ||| |||||| |||| |||||||||||||||| ||| | | Sbjct 12064 GGAGGGTAGCGGTGTTCAAGAGAATCTTGGCACCGTAGGCAAGGGAGAACTGGCAGTTAC 12123 Query 225978 ACAGGTCCTCACCCTCCTC 225996 ||| |||||| || ||||| Sbjct 12124 ACAAGTCCTCGCCTTCCTC 12142 >seq6278 Length=62549 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || || || ||||||||| ||||||||||| | || || || || Sbjct 46789 CCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCG 46848 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 46849 AGGGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCAT 46892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921545870779960