Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 197 3e-45
seq4763 183 6e-41
seq1236 154 3e-32
seq5382 140 6e-28
seq4824 134 3e-26
seq96 114 2e-20
seq6278 102 2e-16
>seq4212
Length=20478
Score = 197 bits (218), Expect = 3e-45
Identities = 180/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | |||||| |||||||| || || ||||| || |||||
Sbjct 2139 CCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAA 2080
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| |||||||| ||||| | || |||||||| |||
Sbjct 2079 AGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 2020
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||| ||||| ||| || |||||||| | || || |||
Sbjct 2019 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACT 1960
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || || |||||||||||||||||||| ||||||||
Sbjct 1959 TCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913
Score = 188 bits (208), Expect = 1e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | ||| || || |||||||| |||||||||||||||||
Sbjct 1911 CCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGAC 1852
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| ||||| | |||||||| || |||
Sbjct 1851 AGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGA 1792
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||||| || ||||||||||| | || || ||
Sbjct 1791 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCACC 1732
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1731 TCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1685
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || || || | ||| || ||| ||| || ||||| || || || ||
Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || || | || || || || ||
Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| |||||||| ||||||||||||| ||| || ||
Sbjct 2247 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACC 2188
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || |||||||| |||||||||||||||||||| ||||||||
Sbjct 2187 TCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141
Score = 122 bits (134), Expect = 2e-22
Identities = 100/122 (82%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || ||||| |||||||| || || ||||| ||||||||||| |||||||||
Sbjct 1683 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGAG 1624
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||||| ||||| || | ||||| || ||||| ||||| | || ||||||||||||
Sbjct 1623 AGTGTCCGACCATCCTCAAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGTGGA 1564
Query 68355 AT 68356
||
Sbjct 1563 AT 1562
Score = 96.9 bits (106), Expect = 6e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420
||||||||||| ||||| ||||||||| |||||||| || | || || || || | |
Sbjct 1505 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCAGAGGACTCAACCTCGAGG 1446
Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||||| || ||||| |||||||| || ||||||||
Sbjct 1445 GTGATGGTTTTGCCGGTGAGTGTCTTGACAAAAATCTGCAT 1405
>seq4763
Length=6291
Score = 183 bits (202), Expect = 6e-41
Identities = 351/513 (68%), Gaps = 6/513 (1%)
Strand=Plus/Minus
Query 268284 CATGGCCCCAATCGCGCTTTGCG--TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCC 268341
|||| ||||| || | |||||| || ||||| |||||| ||| ||| | |||||||||
Sbjct 3303 CATGTCCCCAGTCTC--TTTGCGCATCGATGTTACCGAGGTACAAGCAGTGCTGCTTGCC 3246
Query 268342 GAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAG 268401
|| | | ||||| | | | ||||| | || ||||| ||| || ||
Sbjct 3245 GACGCTGATATCTGCAACGGCCCTGCTAATTTTCCTCGTGACGAAGGTCCTCCCTCGCCT 3186
Query 268402 AGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTA 268461
||||||||||||||||| || || || || ||||| |||| || |||||||| |||||
Sbjct 3185 CGGGCTCTCGTGGTTGAAAAGAATTCCATTACACGCATACATTCCGTATGCCTCGCGGTA 3126
Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521
||| || |||||||||| ||| ||| ||||| ||||||| || |||| |||
Sbjct 3125 GTTAACCGTAATCCAGTATGCGTACAGCTTGGCAACGCCGTACGGGCTGCGAGGATAGAA 3066
Query 268522 GGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGC 268581
|||||||| | || ||| | || |||||| || ||||||| |||||||| ||
Sbjct 3065 AGGCGTCGTCTCGCTCTGTGGGGTCTCAACGACTTTTCCGTAGAGCTCCGAGGTCGAGGC 3006
Query 268582 TTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAG 268641
||||||||| || || | || || | | ||||| || ||||| | || ||
Sbjct 3005 TTGGTAGAAGCGCGTATGCTTGTGAAGCCCAACGGTGCGGATGGCGTCGAGGAGGCGCAG 2946
Query 268642 AGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATG 268701
|| || | |||||| || || || || || || | ||||||||| || |||| ||| ||
Sbjct 2945 GGTACCAAGGCCATCGACATCGGCGGTGTATTCTGCCATCTCGAAAGAGACCTTGACGTG 2886
Query 268702 GCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC-ACGATCTTCACGA 268760
|| || || || || || | ||| | || || || || | || | ||||
Sbjct 2885 CGATTGAGCACCAAGATTGTAGATCTC-TGAGGGGAGAACTTGGGCGAGGACGTAGACGA 2827
Query 268761 GGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793
|||| || ||||| || || ||||||||||
Sbjct 2826 GGTTGGTGCTGTCGGATAGATCACCGTAGTGCA 2794
>seq1236
Length=761
Score = 154 bits (170), Expect = 3e-32
Identities = 129/158 (82%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| |||||||| || || || ||||| | ||||||||| || ||||| || |||
Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| || || ||||||||||| || ||||| ||||| | ||| ||||| ||||| |||
Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||| ||||||||||| ||||| || ||||||||
Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160
Score = 109 bits (120), Expect = 1e-18
Identities = 186/284 (65%), Gaps = 53/284 (19%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || ||||| || | ||| || || ||||| || |||||||| |||||||||
Sbjct 162 CCTCCACGGAGACGCAAGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAG 221
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG- 68353
|| || | ||||| || | |||||| || ||||| ||||| | ||||||||||||||
Sbjct 222 AGCGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGTGGG 281
Query 68354 -------------------------------------------AATG---------CCTT 68361
|||| || |
Sbjct 282 ATACTTCAAACACGACTCTCAGCTCGCGAACGCTGACCTAGTAAATGAATACATACCCCT 341
Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421
|||||||||||||||| ||||| ||| ||||||||||| | || || || || || |
Sbjct 342 CCTTGTCTTGAATCTTGGCCTTAACGTTATCGATGGTGTCAGAGGACTCGACCTCTAATG 401
Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
||||||| || || ||||||||||| ||||| ||||||||| ||
Sbjct 402 TGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCATTCTG 445
>seq5382
Length=4005
Score = 140 bits (154), Expect = 6e-28
Identities = 277/408 (68%), Gaps = 4/408 (1%)
Strand=Plus/Minus
Query 268284 CATGGCCCCAATCGCGCTTTGCG--TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCC 268341
|||| ||||| || | |||||| || ||||| |||||| ||| ||| | |||||||||
Sbjct 3701 CATGTCCCCAGTCTC--TTTGCGCATCGATGTTACCGAGGTACAAGCAGTGCTGCTTGCC 3644
Query 268342 GAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAG 268401
|| | | ||||| | | | ||||| | || ||||| ||| || ||
Sbjct 3643 GACGCTGATATCTGCAACGGCCCTGCTAATTTTCCTCGTGACGAAGGTCCTCCCTCGCCT 3584
Query 268402 AGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTA 268461
||||||||||||||||| ||||| || || ||||| || | || || ||||| |||||
Sbjct 3583 CGGGCTCTCGTGGTTGAAAAGGATTCCATTACACGCATACGTCCCGTACGCCTCGCGGTA 3524
Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521
||| || |||||||||| ||| ||| || || |||||| || |||| |||
Sbjct 3523 GTTAACCGTAATCCAGTATGCGTACAGCTTGGCGACACCGTACGTGCTGCGAGGATAGAA 3464
Query 268522 GGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGC 268581
||||| || | || ||| | || |||||| || ||||||| ||| |||||||
Sbjct 3463 AGGCGTGGTCTCGCTCTGTGGGGTCTCGACGACTTTTCCGTAGAGCTCTGAGATCGATGC 3404
Query 268582 TTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAG 268641
||||||||| || || | || ||| | | |||| || ||||| | | ||
Sbjct 3403 TTGGTAGAAGCGCGTATGCTTGTGAAGCCCGACGGTACGGACGGCGTCGAGGAGGCACAG 3344
Query 268642 AGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGA 268689
|| || |||||| || || || | || || | ||||||||| ||
Sbjct 3343 GGTACCAGGGCCATCGACATCGGCGATGTATTCTGCCATCTCGAAAGA 3296
>seq4824
Length=32535
Score = 134 bits (148), Expect = 3e-26
Identities = 125/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288
|||| || || ||||| || | || | ||| || |||||||| || || |||||||||
Sbjct 163 TAATAGCCACCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAA 104
Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348
|| ||||| || | |||||||| ||||||||||| ||||| || || | ||||| ||
Sbjct 103 TCTGAGAGCGTACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCA 44
Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387
|| || |||||||||||||| |||||||| ||||| |||
Sbjct 43 GGAGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTCACG 5
>seq96
Length=91382
Score = 114 bits (126), Expect = 2e-20
Identities = 366/559 (65%), Gaps = 28/559 (5%)
Strand=Plus/Plus
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507
||||||| ||||||||||| |||||||| || | || || | ||| || ||||
Sbjct 11601 AGGAAGCTGGAGTCGTGGGAGACAATGATAGAAGTGCAAGT-CTTCAAGCTGACAAGGTA 11659
Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567
| |||||| || |||||| || |||| ||||| ||||| || || || || ||
Sbjct 11660 GTTCTCGAGCCAAGCAACGTTGACAACATCCAAATGGTTGGTAGGCTCATCAAGGAGAAG 11719
Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627
||||||||| | | || ||||| | | ||| | |||||||| ||||| || || ||
Sbjct 11720 GATGTCAGCCTTGAAAAGCATGGCCCTAGCGAGGGCAAGCTTCATCTTCCATCCACCTGA 11779
Query 225628 CAGGGAGCCGATTGAAACAGAGTGCTTA----GCT--TCGTCAAAGCCGTACT---CCAG 225678
|| | |||||| | |||||| ||| |||| |||||| || |||
Sbjct 11780 CAAGCTGCCGATGGC------GTGCTTCTGACGCTCATCGTTGAAGCCG-ACGGAACCA- 11831
Query 225679 GAGCGTCTGGATAATGCGCTCGGGAGAG-CTGCGAGCGGCAACGTTGGGGTCGGACGAGA 225737
|| || | ||||| ||||| | | || || || | | || || ||
Sbjct 11832 -AGGGTTTCGATAAC---CTCGGCCTCGTCAGCAAG----AATGCGCGAATCAGAAAGGA 11883
Query 225738 GGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCG 225797
| | | | || | | |||| | || | || |||||||| || || || | |
Sbjct 11884 TGAATTGAAGGACCGACGTGTCGGCCTCACTGCCATCGATGTCGTGCTCGACATAGAAGG 11943
Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857
| || | || || ||||||||||| | ||| || || | || || || | |
Sbjct 11944 TGCGAACCTCGTCAGGGGAAGGGAAGCCCTCAACCTGACCGTTGGTGATGGCGCGCATGA 12003
Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917
|||| |||||||| ||||| |||| ||| |||||| | | || ||||||| |
Sbjct 12004 GGGTTGACTTGCCCGTACCGTTCTTACCGCAGAGACCGTAACGGTGGCCACGCTTGAGGC 12063
Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977
|||| | || ||||| ||| |||||| |||| |||||||||||||||| ||| | |
Sbjct 12064 GGAGGGTAGCGGTGTTCAAGAGAATCTTGGCACCGTAGGCAAGGGAGAACTGGCAGTTAC 12123
Query 225978 ACAGGTCCTCACCCTCCTC 225996
||| |||||| || |||||
Sbjct 12124 ACAAGTCCTCGCCTTCCTC 12142
>seq6278
Length=62549
Score = 102 bits (112), Expect = 2e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
||||||||||| || || || ||||||||| ||||||||||| | || || || ||
Sbjct 46789 CCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCG 46848
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 46849 AGGGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCAT 46892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921545870779960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |