Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2220 210 4e-49 >seq2220 Length=173857 Score = 210 bits (232), Expect = 4e-49 Identities = 331/463 (71%), Gaps = 21/463 (5%) Strand=Plus/Minus Query 42421 TACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCA 42480 |||| ||||||||||| || || || ||||| |||||||| ||||| | | ||| Sbjct 63433 TACTCGCCTTCTTCGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTGAGCGTTTCT 63374 Query 42481 TGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 || ||||| ||| | || || || ||||||||||| ||||| || || |||| Sbjct 63373 CCAATGAGGTTCAGGCCGCCGAAGCCCGGTGCTTCTACGGTTTCCAAATTATGATGGAGA 63314 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC-GTC 42596 | | ||||||||| ||| | ||| |||| |||| || ||| ||||||| | | Sbjct 63313 ATATTCACTCTGAGACCTACTC---ACTCCTCATCGACACCTATATCAAGGATCCCAGAC 63257 Query 42597 GA-GCGTA-ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 | ||| | || || ||| | ||||||||||| || |||||| | ||| ||||| | Sbjct 63256 AACGCGAATAC---CTTTTCGATGCCATGGAGACCATTCCCTGCGTTAAGCGCAAGGCCG 63200 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGC 42712 ||||||| || || ||||| || ||| | || || | || | ||||||| Sbjct 63199 ACTGGGCACTGAAGTGGATAACTGATCA--ACGTTCCACCTTTGCTGAACGATTGGTAGC 63142 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || | ||||||||||| ||||||||||| ||| |||| || ||||||||||||||||| Sbjct 63141 ATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCTGGCTCAA 63082 Query 42773 GCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | | | | ||| ||||| || ||||| ||||| ||||| ||||||||| | || |||| Sbjct 63081 G-AAACGCGGTCTCATGCCTGGTCTCACTTTCTCCAACGAGCTCATCAGCCGTGATGAGG 63023 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 | |||| | |||||||| ||| | || ||| |||||||| Sbjct 63022 GTATGCACACCGACTTTGCTTGCTTGCTCTTC---AGCCACCT 62983 Score = 134 bits (148), Expect = 3e-26 Identities = 291/434 (67%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || |||||||| || || |||||||||||||||||||| |||| |||| ||| Sbjct 64847 GCTTTCTTCGCTGCATCCGACGGCATAGTCAATGAGAATCTGGTTGAGCGGTTTTCGAAC 64906 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| || || || ||||| ||||| ||||| || || |||||| | Sbjct 64907 GAGGTTCAGATTGCAGAAGCTCGATGCTTTTACGGGTTCCAAATCATGATCGAGAACATC 64966 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || || ||| || | || || |||| |||| |||| | ||||| | Sbjct 64967 CATTCCGAGACCTATTCACTCCTTATCGACACCCTCATCAAGGATGTCAATGAGCGGCAG 65026 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 || ||| | || || ||| | || ||| | | ||| ||||| ||||||||| | Sbjct 65027 TTTCTTTTCGATGCAATAGAGTCCATACCCGCCGTTAAGCGCAAGGCAGACTGGGCGTTA 65086 Query 42666 AACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||||| || | | | || || |||| | || || || ||| | || Sbjct 65087 CGATGGATATCTGACAAAC---ATGCCACATTCGCTACCCGACTAGTTGCTTTTGCTGCT 65143 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || |||||||||||||| || || | ||||| || || ||||||||||| || | Sbjct 65144 GTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGGCTCAAAAAGCGTGGA 65203 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | |||||| || ||| | ||||| |||||||||||||| | ||||||||| |||| | Sbjct 65204 TTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGACGAGGGGATGCACACA 65263 Query 42843 GACTTTGCCTGCCT 42856 |||||||| || || Sbjct 65264 GACTTTGCTTGTCT 65277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944260784433680