Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4212 127 5e-24 seq4824 104 6e-17 seq2220 102 2e-16 seq6278 89.7 1e-12 >seq4212 Length=20478 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| ||||| || | ||| || || || || || |||| Sbjct 2143 CATG-CCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGT 2085 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || |||||||| | || || || |||||||| || ||||| || Sbjct 2084 CGGAAAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGG 2025 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || || ||||| ||||| |||||||| ||||| | || ||| | Sbjct 2024 GAGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACT 1965 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | |||||||||||||| || || ||||||||||| |||||||| Sbjct 1964 CCACTTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 116 bits (128), Expect = 9e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || || | |||| || || || | ||||| || || |||||||| ||||| | Sbjct 2367 CCACCACGAAGACGTAAG-ACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGA 2309 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| || || || | || ||||| || |||||||||||||| ||| || Sbjct 2308 CAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGG 2249 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || ||||| || ||||| || || || || || | || || || || Sbjct 2248 GATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCAC 2189 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| || || || || || || ||||||||||| |||||||| Sbjct 2188 CTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141 >seq4824 Length=32535 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| ||| || || || || ||||| || | | Sbjct 157 CCACCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAG 98 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || ||||| || || || ||||||||||| || ||||||||| | ||| Sbjct 97 AGCGTACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGG 38 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| || ||||| || ||||| |||||||| Sbjct 37 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 3 >seq2220 Length=173857 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 || || ||||| ||| | |||||| || || ||||| || || || || || | | Sbjct 62835 ATTGGCATGAACGCCAAGCTCATGCGCCAGTACATCGAGTTTGTCGCAGACCGCTTACTA 62776 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 | | || ||| | ||||| |||||||| || | |||||||||| ||| ||||| | Sbjct 62775 GTGTCGCTGGGTAACGAGAAGGTGTACAACTCTACCAATCCCTTCGACTTCATGGACATG 62716 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312 || ||||| |||| ||||||||||||||||| |||||||| Sbjct 62715 ATCTCGCTACAAGGCAAGACGAACTTCTTCGAGAAGCGTGT 62675 >seq6278 Length=62549 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| || || ||||| || || | || || || || ||| Sbjct 46789 CCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCG 46848 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| || ||||||||||| |||||||| Sbjct 46849 AGGGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCAT 46892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179553995558954