Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4212 113 5e-20 >seq4212 Length=20478 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || || ||||| | ||| || || | || || |||||||| |||||||| Sbjct 1876 CTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAA 1817 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||| ||||| | || | | |||||||||| ||| || || | | Sbjct 1816 GATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTTACATT 1757 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||| ||||| || | |||||||||||||||||| || ||||| || Sbjct 1756 GTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGAC 1697 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 1696 AAAGATCTGCAT 1685 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 2104 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAA 2045 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || ||||||||| ||| || || | ||| Sbjct 2044 GATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCA-CGT 1986 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| ||| ||||| || | ||||| || || ||||| || ||||| | Sbjct 1985 TGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGA 1926 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 1925 CGAAGATCTGCAT 1913 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| || || | || | |||||||||||| || |||||||| || | ||| || || | Sbjct 2356 ACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACC 2297 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || || |||||||| || | || | | |||||| Sbjct 2296 ATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTT 2237 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | |||| | | | ||||| || ||||| || | ||| | Sbjct 2236 GTCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAACGTAA 2178 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| ||||| || ||||| || || || ||||| Sbjct 2177 TGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | |||||| ||||| || | || ||||||||| || |||||||| | Sbjct 1683 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGAG 1624 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | || || || ||||| || ||||| ||||| ||||||||||||| ||| Sbjct 1623 AGTGTCCGACCATCCTCAAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGTGG 1565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543167692967120