Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 114 1e-20
seq2220 91.5 1e-13
seq1236 89.7 5e-13
>seq4212
Length=20478
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| | || | | | ||||| || || ||||| || ||| |
Sbjct 1911 CCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGAC 1852
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| || || || || | |||| || ||||||||||| |||||
Sbjct 1851 AGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGA 1792
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || |||| ||||| | | |||||| | |||||||||
Sbjct 1791 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGT-CGATGGTGTCAGACGACTCCAC 1733
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
||| | ||| | ||||| || || || || || ||||| ||||||||| ||
Sbjct 1732 CTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGCCT 1681
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||| | || | |||| | |||||||| |||||||||||||||
Sbjct 2140 GCCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 2081
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| |||||| ||| ||||| || || |||| |||| || ||||| ||||| |||||
Sbjct 2080 AAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2021
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | |||||| | |||||||||
Sbjct 2020 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCAC 1961
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||| || || || || || || || || ||||||||
Sbjct 1960 TTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913
Score = 104 bits (114), Expect = 2e-17
Identities = 142/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || || |||||||| || || || ||||| || || || |||| | |
Sbjct 2332 CTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAA 2273
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
||| |||||||| || ||||| || ||||| || ||||| ||| | || | || | |
Sbjct 2272 GATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 2214
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
||| | | |||||| | ||||||||||| | ||| | |||||||| || || || ||
Sbjct 2213 TGT-CGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTG 2155
Query 138601 ACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 2154 ACGAAAATCTGCATG 2140
>seq2220
Length=173857
Score = 91.5 bits (100), Expect = 1e-13
Identities = 117/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730
||||||||||| || |||| || |||||||||||||||| || || || | | |||
Sbjct 62832 GGCATGAACGCCAAGCTCATGCGCCAGTACATCGAGTTTGTCGCAGACCGCTTACTAGTG 62773
Query 52731 CAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789
||| ||| | | | ||| | |||| || |||||| || || || ||| ||| ||
Sbjct 62772 TCGCT-GGGTAACGAGAAGGTGTACAACTCTACCAATCCCTTCGACTTCATGGACATGAT 62714
Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
||||| | |||||||| ||||| ||||||||||| ||
Sbjct 62713 CTCGCTACAAGGCAAGACGAACTTCTTCGAGAAGCGTGT 62675
>seq1236
Length=761
Score = 89.7 bits (98), Expect = 5e-13
Identities = 112/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528
|| || || | | |||| || || |||||||||||||| ||||| || || || |||
Sbjct 15 TGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTATCCTGGATC 74
Query 138529 TTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACC 138587
||| || | |||| || | ||||||| ||||| ||||| | ||| | ||||||||
Sbjct 75 TTTGCCTTAACATTG-TCGATAGTGTCGGATGACTCTACCTCCAACGTGATGGTTTTACC 133
Query 138588 AGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
|| || ||||| ||||| ||||||||| ||
Sbjct 134 CGTGAGGGTTTTGACAAAGATCTGCATGCCT 164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496221191610960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |