Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4212 114 1e-20 seq2220 91.5 1e-13 seq1236 89.7 5e-13 >seq4212 Length=20478 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | || | | | ||||| || || ||||| || ||| | Sbjct 1911 CCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGAC 1852 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || || | |||| || ||||||||||| ||||| Sbjct 1851 AGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGA 1792 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || |||| ||||| | | |||||| | ||||||||| Sbjct 1791 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGT-CGATGGTGTCAGACGACTCCAC 1733 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | ||| | ||||| || || || || || ||||| ||||||||| || Sbjct 1732 CTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGCCT 1681 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | |||| | |||||||| ||||||||||||||| Sbjct 2140 GCCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 2081 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||| ||||| || || |||| |||| || ||||| ||||| ||||| Sbjct 2080 AAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2021 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 2020 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCAC 1961 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || || || || || || || |||||||| Sbjct 1960 TTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 104 bits (114), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || || |||||||| || || || ||||| || || || |||| | | Sbjct 2332 CTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAA 2273 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| |||||||| || ||||| || ||||| || ||||| ||| | || | || | | Sbjct 2272 GATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 2214 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 ||| | | |||||| | ||||||||||| | ||| | |||||||| || || || || Sbjct 2213 TGT-CGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTG 2155 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 2154 ACGAAAATCTGCATG 2140 >seq2220 Length=173857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 ||||||||||| || |||| || |||||||||||||||| || || || | | ||| Sbjct 62832 GGCATGAACGCCAAGCTCATGCGCCAGTACATCGAGTTTGTCGCAGACCGCTTACTAGTG 62773 Query 52731 CAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 ||| ||| | | | ||| | |||| || |||||| || || || ||| ||| || Sbjct 62772 TCGCT-GGGTAACGAGAAGGTGTACAACTCTACCAATCCCTTCGACTTCATGGACATGAT 62714 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||| | |||||||| ||||| ||||||||||| || Sbjct 62713 CTCGCTACAAGGCAAGACGAACTTCTTCGAGAAGCGTGT 62675 >seq1236 Length=761 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528 || || || | | |||| || || |||||||||||||| ||||| || || || ||| Sbjct 15 TGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTATCCTGGATC 74 Query 138529 TTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACC 138587 ||| || | |||| || | ||||||| ||||| ||||| | ||| | |||||||| Sbjct 75 TTTGCCTTAACATTG-TCGATAGTGTCGGATGACTCTACCTCCAACGTGATGGTTTTACC 133 Query 138588 AGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || ||||| ||||| ||||||||| || Sbjct 134 CGTGAGGGTTTTGACAAAGATCTGCATGCCT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496221191610960