Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4212 120 3e-22 seq2220 82.4 7e-11 >seq4212 Length=20478 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || || |||||| || ||| ||| ||| || ||||| || ||| Sbjct 1881 GTAGACTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCAAGCTGCTTGCCA 1822 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||| || || ||||| || |||||||||||| ||| ||| ||| Sbjct 1821 GCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTT 1762 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | || | |||||||| || || || Sbjct 1761 ACATTGTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTC 1702 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||| ||||||||| || Sbjct 1701 TTGACAAAGATCTGCATGCCT 1681 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || |||||||| || || ||||||| ||| || ||||| ||||| || | Sbjct 2332 CTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAA 2273 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| ||||||||||| || || || |||||||||||| || ||| ||||| | Sbjct 2272 GATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2213 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| | ||| || || | || | ||||| || || || || || || Sbjct 2212 GTCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGAC 2153 Query 127102 AAAAATCTGCATG 127114 |||||||||||| Sbjct 2152 GAAAATCTGCATG 2140 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| || ||||| || ||||| ||||| ||| | || ||| || || ||||| Sbjct 2115 TGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAGCTGC 2056 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | |||||||| |||||||| |||||||||||||| ||| ||| Sbjct 2055 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTC 1996 Query 127031 TGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| | |||| || | |||||| | ||| ||||| | || | ||| || || || Sbjct 1995 GCCTTCACGTTG-TCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCGT 1937 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || |||||||| Sbjct 1936 GAGGGTCTTGACGAAGATCTGCAT 1913 >seq2220 Length=173857 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||||| || | ||| | |||||||||| |||||||| |||||| | || || Sbjct 62832 GGCATGAACGCCAAGCTCATGCGCCAGTACATCGAGTTTGTCGCAGACCGCTTACTAGTG 62773 Query 47472 CAGCTAAAGTATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| ||| | ||| | ||| || | ||||| ||||| || ||| ||| || Sbjct 62772 TCGCTGG-GTAACGAGAAGGTGTACAACTCTACCAATCCCTTCGACTTCATGGACATGAT 62714 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||||| | |||||||| ||||| ||||||||||| || Sbjct 62713 CTCGCTACAAGGCAAGACGAACTTCTTCGAGAAGCGTGT 62675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475461315602320