Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 120 3e-22
seq2220 82.4 7e-11
>seq4212
Length=20478
Score = 120 bits (132), Expect = 3e-22
Identities = 147/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||||||||| || || || |||||| || ||| ||| ||| || ||||| || |||
Sbjct 1881 GTAGACTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCAAGCTGCTTGCCA 1822
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||| || || ||||| || |||||||||||| ||| ||| |||
Sbjct 1821 GCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTT 1762
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | ||| || || | || | |||||||| || || ||
Sbjct 1761 ACATTGTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTC 1702
Query 127097 TTTACAAAAATCTGCATGGCT 127117
|| ||||| ||||||||| ||
Sbjct 1701 TTGACAAAGATCTGCATGCCT 1681
Score = 109 bits (120), Expect = 5e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || |||||||| || || ||||||| ||| || ||||| ||||| || |
Sbjct 2332 CTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAA 2273
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041
||||| ||||||||||| || || || |||||||||||| || ||| ||||| |
Sbjct 2272 GATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2213
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|||| |||||| | ||| || || | || | ||||| || || || || || ||
Sbjct 2212 GTCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGAC 2153
Query 127102 AAAAATCTGCATG 127114
||||||||||||
Sbjct 2152 GAAAATCTGCATG 2140
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970
|||| || ||||| || ||||| ||||| ||| | || ||| || || |||||
Sbjct 2115 TGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAGCTGC 2056
Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030
|| || ||| |||| | |||||||| |||||||| |||||||||||||| ||| |||
Sbjct 2055 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTC 1996
Query 127031 TGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
||| | |||| || | |||||| | ||| ||||| | || | ||| || || ||
Sbjct 1995 GCCTTCACGTTG-TCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCGT 1937
Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113
|| || || || || ||||||||
Sbjct 1936 GAGGGTCTTGACGAAGATCTGCAT 1913
>seq2220
Length=173857
Score = 82.4 bits (90), Expect = 7e-11
Identities = 115/159 (72%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471
|| |||||||| || | ||| | |||||||||| |||||||| |||||| | || ||
Sbjct 62832 GGCATGAACGCCAAGCTCATGCGCCAGTACATCGAGTTTGTCGCAGACCGCTTACTAGTG 62773
Query 47472 CAGCTAAAGTATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530
||| ||| | ||| | ||| || | ||||| ||||| || ||| ||| ||
Sbjct 62772 TCGCTGG-GTAACGAGAAGGTGTACAACTCTACCAATCCCTTCGACTTCATGGACATGAT 62714
Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
||||| | |||||||| ||||| ||||||||||| ||
Sbjct 62713 CTCGCTACAAGGCAAGACGAACTTCTTCGAGAAGCGTGT 62675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475461315602320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |