Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2220 134 2e-26 seq4642 122 1e-22 >seq2220 Length=173857 Score = 134 bits (148), Expect = 2e-26 Identities = 351/526 (67%), Gaps = 17/526 (3%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | |||||| |||||| |||||| || || ||||| ||||| Sbjct 63003 AGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACC 63062 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| || ||||| | |||||| || | ||| ||||||||||||||||| Sbjct 63063 AGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAGAAGAT 63122 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-- 127696 ||||| || ||||| || | | || || |||||| | || || ||| |||| Sbjct 63123 ACCCTCGACGGCAGCGAATGCTACCAATCGTTCAGCAAAG--GTGGAACGTTG-ATCAGT 63179 Query 127697 -AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | |||||||| ||||| | ||||| || | || || | ||||| || || || Sbjct 63180 TATCCACTTCAGTGCCCAGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCCATGGCATC 63239 Query 127756 AAAGAGTTCCTTC---TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATA 127812 || || | ||| || |||| ||||| ||||| || | || ||||| ||| || Sbjct 63240 GAAAAGGT-ATTCGCGTTGTCTG--GGATCCTTGATATAGGTGTCGATGAGGAGTGAGTA 63296 Query 127813 TGTTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGC 127871 || || ||| | | | ||| || || || ||||||| | || |||||| Sbjct 63297 GGTCTCAGAGTGAATATTCTCCATCATAATTTGGAAAC-CGTAGAAGCACCGGGCTTCGG 63355 Query 127872 TTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACC 127931 ||| ||||||| || ||| | | || || ||| || || |||||||| Sbjct 63356 CGGCCTGAACCTCATTGGAGAAACGCTCAACGAGGTTTTCATTGACGATGCCATCGGATG 63415 Query 127932 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCT 127988 |||| || || || || | || |||||| | | || || || || | || | Sbjct 63416 CAGCGAAGAAGGCGAGTACATGTGATATGAAGTGGCGCTCGTTGTCATTGAGACGGTTGG 63475 Query 127989 TCCAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||| | | || ||||||||||| | |||||| |||||||| Sbjct 63476 TCCAGTCATGAACGTCTTTTGAGAGATCCATCTCCTCAGCAGTCCA 63521 >seq4642 Length=14046 Score = 122 bits (134), Expect = 1e-22 Identities = 267/395 (68%), Gaps = 10/395 (3%) Strand=Plus/Plus Query 116148 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGG 116206 ||| |||||||| | || || || || ||||||||||| | ||| | |||| | | Sbjct 9159 GCTGGCCTCGAGTCCGGCATGGTAGATGGTCTCAAAAATCTGGAGATTGAGCTGCC-TCG 9217 Query 116207 CCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 116266 |||| | || || || | || ||| | ||||| |||| || ||||| || |||| Sbjct 9218 CCTCCGCTGAGTCGAATGGCAGGCGGAGAATCATAAAAGCATCAGCAAGACCCTGTACAC 9277 Query 116267 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAA 116325 | || ||||| ||||| |||| | | || || || |||| ||| | ||| ||| | Sbjct 9278 CAAGACCAATGGGGCGGTGTCGCGTGTTGGATTTGTGAGC-CTCTGGGATGGGGTAATAG 9336 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || |||||| | | ||||| || |||||| |||||||| | || ||||||||| Sbjct 9337 TTGACATCGATGATGCGGTTTAGGTTGCGGGTGACGACCTTTGTAACATCGTGAAGCTTT 9396 Query 116386 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 | | ||||| | ||| | | || || | || ||||||| || || || Sbjct 9397 TGGAAATCATACTTGC------CGTTGGAGATGTAAGTGGGGAGGGCGAGGGAGGCAAGG 9450 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505 || ||||| | ||| ||||| | | ||||| || ||||| || ||||| || || Sbjct 9451 TTGCACACCGCGGTTTCATCTGGAGACGAGTACTGGATTATTTCAGTGCACAAGTTCGAC 9510 Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 ||| ||||| |||||||||||||| || || || Sbjct 9511 GACTTGATGGTTCCCAAGTTCTTTTGGTTCGATTT 9545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613456255895880