Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2220 109 9e-19 seq4642 87.8 3e-12 >seq2220 Length=173857 Score = 109 bits (120), Expect = 9e-19 Identities = 370/574 (64%), Gaps = 12/574 (2%) Strand=Plus/Minus Query 159912 TAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGG 159971 |||| | || || |||||||| ||||| |||||||| ||| ||||| ||||| | Sbjct 65285 TAAATAAAAGACAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGTTCGTTTG 65226 Query 159972 ACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCAC 160031 | | |||||| ||||| | |||||| ||||||||| || || | || |||| || Sbjct 65225 AGAAAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAAC 65166 Query 160032 CGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGT 160091 || ||| ||||| ||||| || || ||||| || || || | | | || | ||| | Sbjct 65165 CGGAAAAGAAGATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCAT 65106 Query 160092 TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGC----ATG 160147 ||||| |||| | | ||||| || ||||| ||| | ||||| ||| Sbjct 65105 GTTTGTCAGATATCCATCGTAACGCCCAGTCTGCCTT----GCGCTTAACGGCGGGTATG 65050 Query 160148 CGCTCGACGGCGTT--AAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAA 160205 ||| | || | ||| || ||| | |||| || ||||||||||| || || | | Sbjct 65049 GACTCTATTGCATCGAAAAGAAACTGCC--GCTCATTGACATCCTTGATGAGGGTGTCGA 64992 Query 160206 TCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAAT 160265 | || || || | || | || | || ||||| || || || ||| || Sbjct 64991 TAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGC 64932 Query 160266 ATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCA 160325 || || || | ||| ||||| | | |||| | | ||||||| |||| || | Sbjct 64931 ATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTA 64872 Query 160326 ACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGT 160385 ||||||| || || |||||||| || || || ||||||||||| | || | | Sbjct 64871 TGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATTTGAAG 64812 Query 160386 TGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAAT 160445 | || | | | ||||| | | ||| || | ||| | ||||| ||| ||||| Sbjct 64811 TTAGGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAA 64752 Query 160446 TGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | ||||| || ||||||||||| ||| || Sbjct 64751 AAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 >seq4642 Length=14046 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 ||| ||| | ||||| |||| ||| | | || || | | | | || ||||||||||| Sbjct 8475 TCTGGTCAATAGTGAATTGAACGGCTTGCGTTGCTGGTCGGGTGCGCAAATAGTACATGC 8534 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC-GTTG 203956 | ||||| |||||||||| ||| ||||| | ||||||| | || | | || || | Sbjct 8535 CAGTCTTAAGGCCCTTCTTCCATCCGTAGAAGTGCATGCTCGTCAACTGCCCAACGGTAG 8594 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 | | | | || || ||||||||| ||| || || ||| ||||| || || || || Sbjct 8595 GAGACTG-CAGATGGATGTTCAGACTCTGACTCTGACAAATG-AAGGCTCCACGGTCGGC 8652 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 || | | ||| | |||||||||| |||||||| || |||||| Sbjct 8653 AGCAAGGTCGATGACCTTCTTCTGCGAGATCTCCCATACAGTCTTG 8698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795089172300080