Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 150 4e-31
seq1236 122 2e-22
seq6241 100 7e-16
seq6278 93.3 1e-13
seq4642 93.3 1e-13
seq4824 89.7 1e-12
>seq4212
Length=20478
Score = 150 bits (166), Expect = 4e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| ||||| ||||| |||||||| || | ||||||||| | | |||
Sbjct 2133 CGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTA 2074
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| |||||||| |||||||||||||| ||||||||||| ||| ||| ||
Sbjct 2073 CGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCC 2014
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| ||||||| || | |||||| | | || || |||||
Sbjct 2013 TCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAAT 1954
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| |||||||| || || || || || ||
Sbjct 1953 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTG 1916
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | | |||||||||||| || |||||| |||| |||||||| | || ||
Sbjct 2361 CGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTG 2302
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||||||||| ||||| ||||||||||| ||||| || ||
Sbjct 2301 CGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCC 2242
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| || |||| |||||||| || || || ||||||
Sbjct 2241 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAAC 2182
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||||||||| || || || ||||| ||
Sbjct 2181 GTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTG 2144
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || ||||| || || ||||| || |||| ||| || || | || ||
Sbjct 1905 CGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTA 1846
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || ||||||||||| ||||| ||||| ||| ||| ||
Sbjct 1845 CGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCC 1786
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || |||| |
Sbjct 1785 TCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCACCTCCAGC 1726
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || |||||||| || || ||||| || ||
Sbjct 1725 GTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTG 1688
Score = 91.5 bits (100), Expect = 3e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | || ||| | ||| || || ||||||||||||| |||||| || | | |||
Sbjct 1677 CGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGAGAGTGTC 1618
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| ||||| || || ||||| || ||||||||||||||||||||||| ||
Sbjct 1617 CGACCATCCTCAAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGG 1568
>seq1236
Length=761
Score = 122 bits (134), Expect = 2e-22
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
|||||||||| ||||||||| || |||||||| || || ||||||||| ||| || ||
Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
||||| |||||| ||| || |||| ||||| | || ||||| |||||||||
Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||||||||| ||||| ||||| || ||
Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTG 157
Score = 91.5 bits (100), Expect = 3e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | || ||||||||| || || |||||||| |||| |||||| || | | ||
Sbjct 168 CGGAGACGCAAGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGCGTG 227
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| ||||| ||||||||||| || ||||||||||| ||||| ||||| ||
Sbjct 228 CGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGG 277
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
|| |||||||| || |||||| |||| ||||| | || | ||||||||||| |||||
Sbjct 262 CTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACGCTCTCCGATTACAACATCCAG 203
Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|| |||||||| ||||||||||| ||| | || ||
Sbjct 202 AAGGAGTCTACCCTTCACCTTGTCTTGCGTCTCCG 168
>seq6241
Length=43505
Score = 100 bits (110), Expect = 7e-16
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AGTCCTTCCATC 199476
||||| | ||| ||||| || |||||||||| ||||||||| || || ||| | |||||
Sbjct 25920 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTC-GCTAAGAGTACGGCCATC 25862
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
|| ||||||||||| |||||||| |||||||||||||| ||
Sbjct 25861 CTCGAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGG 25820
>seq6278
Length=62549
Score = 93.3 bits (102), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||||||||| || |||||||| |||| ||||||||| | || | |||||
Sbjct 46618 AGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 46677
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
|| || |||||||| ||||||||||| ||||| ||||| ||
Sbjct 46678 TCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGG 46718
>seq4642
Length=14046
Score = 93.3 bits (102), Expect = 1e-13
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 167864 CCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGA 167923
|| ||||| |||||| ||||||||||| ||||||| |||| |||| || ||||| ||||
Sbjct 9701 CCCTCTTTCTCGTATTTCTCATAGAGGGCTTCGAATTCCTCGCCGTGAACTTCGTGAAGA 9760
Query 167924 CCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCAT 167982
| || ||||| || ||||| || || ||| ||| ||| || |||||| | |||||
Sbjct 9761 TCAGGCGCTTCATTGGGACAGAAAAGCGACCAGTTTTCATTGGCCTCGACACGTTTCAT 9819
>seq4824
Length=32535
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| ||||| || || |||||||| || | ||| || || | | ||
Sbjct 151 CGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGTA 92
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| |||||| || |||||||| || ||||| || || ||| || |||
Sbjct 91 CGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCCT 32
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACG 199555
|| ||||||||||| |||||||
Sbjct 31 TCCTTGTCCTGAATCTTCGCCTTCACG 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178821257930081
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |