Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4212 150 4e-31 seq1236 122 2e-22 seq6241 100 7e-16 seq6278 93.3 1e-13 seq4642 93.3 1e-13 seq4824 89.7 1e-12 >seq4212 Length=20478 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| ||||| |||||||| || | ||||||||| | | ||| Sbjct 2133 CGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTA 2074 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| |||||||||||||| ||||||||||| ||| ||| || Sbjct 2073 CGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCC 2014 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||||||| || | |||||| | | || || ||||| Sbjct 2013 TCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAAT 1954 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || || || || Sbjct 1953 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTG 1916 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | | |||||||||||| || |||||| |||| |||||||| | || || Sbjct 2361 CGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTG 2302 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||| ||||| ||||||||||| ||||| || || Sbjct 2301 CGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCC 2242 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| |||||||| || || || |||||| Sbjct 2241 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAAC 2182 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||||||||| || || || ||||| || Sbjct 2181 GTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTG 2144 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || ||||| || |||| ||| || || | || || Sbjct 1905 CGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTA 1846 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || ||||||||||| ||||| ||||| ||| ||| || Sbjct 1845 CGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCC 1786 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || |||| | Sbjct 1785 TCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCACCTCCAGC 1726 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||| || || ||||| || || Sbjct 1725 GTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTG 1688 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| || || ||||||||||||| |||||| || | | ||| Sbjct 1677 CGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGAGAGTGTC 1618 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || || ||||| || ||||||||||||||||||||||| || Sbjct 1617 CGACCATCCTCAAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGG 1568 >seq1236 Length=761 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| ||||||||| || |||||||| || || ||||||||| ||| || || Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| |||||| ||| || |||| ||||| | || ||||| ||||||||| Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||||||||| ||||| ||||| || || Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTG 157 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||||||||| || || |||||||| |||| |||||| || | | || Sbjct 168 CGGAGACGCAAGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGCGTG 227 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || ||||||||||| ||||| ||||| || Sbjct 228 CGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGG 277 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| |||| ||||| | || | ||||||||||| ||||| Sbjct 262 CTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACGCTCTCCGATTACAACATCCAG 203 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || |||||||| ||||||||||| ||| | || || Sbjct 202 AAGGAGTCTACCCTTCACCTTGTCTTGCGTCTCCG 168 >seq6241 Length=43505 Score = 100 bits (110), Expect = 7e-16 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AGTCCTTCCATC 199476 ||||| | ||| ||||| || |||||||||| ||||||||| || || ||| | ||||| Sbjct 25920 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTC-GCTAAGAGTACGGCCATC 25862 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || ||||||||||| |||||||| |||||||||||||| || Sbjct 25861 CTCGAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGG 25820 >seq6278 Length=62549 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || |||||||| |||| ||||||||| | || | ||||| Sbjct 46618 AGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 46677 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || || |||||||| ||||||||||| ||||| ||||| || Sbjct 46678 TCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGG 46718 >seq4642 Length=14046 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 167864 CCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGA 167923 || ||||| |||||| ||||||||||| ||||||| |||| |||| || ||||| |||| Sbjct 9701 CCCTCTTTCTCGTATTTCTCATAGAGGGCTTCGAATTCCTCGCCGTGAACTTCGTGAAGA 9760 Query 167924 CCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCAT 167982 | || ||||| || ||||| || || ||| ||| ||| || |||||| | ||||| Sbjct 9761 TCAGGCGCTTCATTGGGACAGAAAAGCGACCAGTTTTCATTGGCCTCGACACGTTTCAT 9819 >seq4824 Length=32535 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || || |||||||| || | ||| || || | | || Sbjct 151 CGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGTA 92 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| || ||||| || || ||| || ||| Sbjct 91 CGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCCT 32 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACG 199555 || ||||||||||| ||||||| Sbjct 31 TCCTTGTCCTGAATCTTCGCCTTCACG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178821257930081