Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2220 255 6e-63 seq4212 113 5e-20 seq6278 87.8 2e-12 seq6241 82.4 8e-11 seq1236 82.4 8e-11 >seq2220 Length=173857 Score = 255 bits (282), Expect = 6e-63 Identities = 397/562 (71%), Gaps = 9/562 (2%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||| | |||||||||||||||| |||| ||||| || | | ||||| |||||| Sbjct 62990 TGAAGAGCAAGCAAGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTGG 63049 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||||| | || |||||||| |||||||| |||||||| || |||| || || || Sbjct 63050 AGAAAGTGAGACCAGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGC 63109 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| ||||||||||| ||||| || |||| || || | || |||| Sbjct 63110 CAGAGAAGAAGATACCCTCGACGGCAGCGAATGCTACCAATCGTTCAGCAAAGGTGGAA- 63168 Query 133064 CTTTGCTG-GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | ||| | | ||||| ||| ||||| |||||||| || ||||| || || || Sbjct 63169 CGTTGATCAGTTATCCACTTCAGTGCCCAGTCGGCCTTGCGCTTAACGCAGGGAATGGTC 63228 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180 || ||||| | || || | | | | | | ||| | | ||||||||||||| Sbjct 63229 TCCATGGCATCGAA--AAGGTATTCGCGTTGTCTGGGATCCTTGATATAGGTGTCGATGA 63286 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 || || || | || ||||| | |||||||| ||||| || ||||| ||||||| Sbjct 63287 GGAGTGAGTAGGTCTCAGAGTGAATATTCTCCATCATAATTTGGAAACCGTAGAAGCACC 63346 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 | || ||| | |||| || || | | ||||||||| || || ||||| |||||||||| Sbjct 63347 GGGCTTCGGCGGCCTGAACCTCATTGGAGAAACGCTCAACGAGGTTTTCATTGACGATGC 63406 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | ||| || ||||| ||||| || || || ||||| |||||||||||||| || | Sbjct 63407 CATCGGATGCAGCGAAGAAGGCGAGTACATGTGATATGAAGTGGCGCTCGTTGTCATTGA 63466 Query 133361 AGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 || | |||||| | ||| || || || |||| |||||| | ||||| || | Sbjct 63467 GACGGTTGGTCCAGTCATGAACGTCTTTTGAGAGATCCATCTCCTCAGCAGTCCAGAAGG 63526 Query 133418 ACGCCTCGGCTTTTTTGTACAT 133439 | |||||||| || |||||||| Sbjct 63527 ATGCCTCGGCCTTCTTGTACAT 63548 Score = 199 bits (220), Expect = 4e-46 Identities = 383/559 (69%), Gaps = 7/559 (1%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||||||||| |||| |||||||| | ||||||||||| ||||| | | Sbjct 65274 CAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGG 65215 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| | || || ||||||||||| ||||| | |||||| || ||||||||| Sbjct 65214 CCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAG 65155 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||| || || || ||||| || || || |||| ||||| | |||| | Sbjct 65154 ATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGAT 65095 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||||| || | |||||| || ||||| || ||| || || | || || || | Sbjct 65094 ATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCG 65035 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGGGTCGAATACAT 133193 || | | | ||| | || | | | ||||||||| ||| ||||| | Sbjct 65034 AAAAGAAACTGCCGCTCATT-GACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGT 64976 Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253 || || || | |||||| || |||||| || ||||||||||| || || || | | Sbjct 64975 CTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAAT 64916 Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313 ||| || || | | || ||||| |||||||| || ||||| ||||||||| || || Sbjct 64915 CTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGC 64856 Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTC-GTTGTCGTTCAAGCG---CTCCC 133369 ||| || || | || || ||||||||| || || ||| ||| | ||| | || Sbjct 64855 GAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATTTGAAGTT-AGGCGGGTATTCC 64797 Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||||| |||| |||| || |||| || ||| |||||||||| || |||||||||| Sbjct 64796 AGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTT 64737 Query 133430 TTTTGTACATACTCCACAT 133448 |||||||||| |||| || Sbjct 64736 TTTTGTACATGTTCCAAAT 64718 >seq4212 Length=20478 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || ||||| | || || ||| | | Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| ||||||| Sbjct 1973 GACACCATAGACAACG-TGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCA 2031 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 2032 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAA 2091 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| | || || || | || || ||| | | |||||| Sbjct 2092 CATTCAGAAGGAGTCCACTCTACACCTCGTCCTTCGTCTTCGTGGCGGC 2140 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || |||||||||||||||||||| | || || ||| | | Sbjct 1685 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCT 1744 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| ||||| | |||||| Sbjct 1745 GACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 1804 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| ||||| || || | || || || ||| || ||| Sbjct 1805 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAAC 1864 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || || | || || ||| | | ||||| Sbjct 1865 ATCCAGAAAGAGTCTACCCTTCACCTCGTTCTTCGTCTTCGTGGCGG 1911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 ||||| ||||||| ||||| ||||| | ||||||||| || || || || | || || Sbjct 1562 ATTCCACCCGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAACTTGAGGATGGTCGGACA 1621 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||| ||||||||||||||||| | || || || ||||| ||||| Sbjct 1622 CTCTCCGATTACAACATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGT 1672 >seq6278 Length=62549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 |||||| | ||||||||||| ||||| | ||| || || || || || || | |||||| Sbjct 46724 ATTCCCCCTGACCAACAGCGCCTCATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACC 46665 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||| ||||||||||||||| ||||| | ||||| || Sbjct 46664 CTCAGCGACTACAACATCCAGAAGGAGTCCACGCTCCA 46627 >seq6241 Length=43505 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| ||||||| ||||| || || | ||| || || ||||| || || | || || Sbjct 25814 ATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGAAAGCAGCTCGAGGATGGCCGTACT 25873 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || | |||||||||||||||||||||| | || || || ||||| || || Sbjct 25874 CTTAGCGACTACAACATCCAAAAGGAATCCACTCTTCACTTGGTCCTCCG 25923 >seq1236 Length=761 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| |||||||| ||||||||||| | || || ||| | || Sbjct 160 ATGCAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCC 101 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | ||| |||| || || ||||| ||||| | |||||| Sbjct 100 GACACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAA 41 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 || || ||||| | || || || ||| |||| || Sbjct 40 CAACGCCTCATCTTTGCTGGAAAGCAGTTGGAAGA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500131266901120