Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6280 123 1e-22 seq5540 93.3 2e-13 >seq6280 Length=76176 Score = 123 bits (136), Expect = 1e-22 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || ||||| || || ||||||||||||||||||||||||||||| || |||| Sbjct 43301 ATGCTGTCATCACTGTACCAGCCTATTTCAATGATGCACAACGGCAAGCAACGAAGGATG 43360 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || ||||| ||| | | |||||||| | || || |||||||| || ||||||| Sbjct 43361 CCGGTCAAATTGCGGGTCTCGAAGTTCTTCGGGTGATCAACGAACCTACGGCTGCTGCTC 43420 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 43421 TTGCCTATGGTCT 43433 >seq5540 Length=5447 Score = 93.3 bits (102), Expect = 2e-13 Identities = 195/287 (68%), Gaps = 14/287 (5%) Strand=Plus/Minus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 ||| | |||| || || ||| | || || |||||||||||||||||| ||||||||| | Sbjct 4782 TTAGTCATGCTGTCATCACTATACCAGCCTATTTCAATGATGCACAATGGCAAGCAATGA 4723 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA---ACCTACAG 451430 | ||||| | || ||||| ||| | | || ||||| | || || || ||||| | Sbjct 4722 AGGATGCCAGTCAAATTGCGGGTCTTGAAGTGCTTCGGGTGATGAACGATTCACCTATGG 4663 Query 451431 CAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAG 451490 | |||||||| || ||||| || ||| | | || | | ||| | Sbjct 4662 CTGCTGCTCTTGCCTATGGTCT-GGACTGT--------TCTGATTCATCAGTGATTGCGG 4612 Query 451491 TATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG-ATGGGGTA 451549 | | ||| |||| || || || ||||| ||| | ||| | || || | || || Sbjct 4611 TCTATGACCTTGGAGGTGGTACCTTTGATATTTC-GATCTTGGAGATGCAGAAAGGTGTC 4553 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 |||||||| ||| |||||||||| |||||||| || || ||||| || Sbjct 4552 TTTGAAGTCAAGTCAACCAATGGCGATACTCACCTTGGTGGTGAGGA 4506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975550239815444