Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4212 161 2e-34 seq4824 122 2e-22 seq6241 96.9 8e-15 seq1236 93.3 9e-14 >seq4212 Length=20478 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || ||||| ||||| |||| |||||| | || |||||| Sbjct 2121 ACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCG 2062 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| ||||||||||| || |||||||| Sbjct 2061 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGG 2002 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| || |||||||| | || | |||||| Sbjct 2001 ATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTC 1942 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1941 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 >seq4824 Length=32535 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || ||||| || ||||| | || || | |||||||| Sbjct 139 ACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGTACGACCATCTTCC 80 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| |||||||||||||| || ||||| || ||||| |||||||| ||||| ||| Sbjct 79 AACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGA 20 Query 195052 ATTTTTTGCTTGACGTT 195068 || || ||| ||||| Sbjct 19 ATCTTCGCCTTCACGTT 3 >seq6241 Length=43505 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || ||||| || ||||| ||| |||||| | ||||| |||||||| Sbjct 25912 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTACGGCCATCCTCGAGCTG 25853 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 ||| ||||||||||| || || || ||||| || || |||| Sbjct 25852 CTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGC 25812 >seq1236 Length=761 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| ||||||||||| || ||||| || || || |||||||||| || || | Sbjct 170 GAGACGCAAGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGCGTGCG 229 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 ||||| || |||||||| || |||||||| || || |||||||| || || || Sbjct 230 ACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGTGGGAT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109387168207181