Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 109 4e-19
>seq4212
Length=20478
Score = 109 bits (120), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829
|| || | ||| | |||||| || ||||| || || ||||| || || | || ||||
Sbjct 2352 AAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCC 2293
Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889
|| ||||| ||||||||||| || || || ||||| || |||| | |||||||||||
Sbjct 2292 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 2233
Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTAT 34945
||||||| ||||| || | ||||| || | ||| || || | || ||
Sbjct 2232 TGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTCTGATGACTCCACCTCCAACGTAAT 2177
Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||||| |||||||| ||||| || || ||||||||
Sbjct 2176 GGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| ||||| | || | || || ||||| || ||||| ||
Sbjct 2103 TCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAG 2044
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| |||||| || |||
Sbjct 2043 ATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTG 1984
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
|||| | ||| | ||| || || | || || || || |||||||| ||||| ||
Sbjct 1983 TCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACG 1924
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 1923 AAGATCTGCATA 1912
Score = 93.3 bits (102), Expect = 3e-14
Identities = 139/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| |||||||| || || || | || |||| || ||||| || || || ||
Sbjct 1875 TCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAG 1816
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || ||||| | || | ||||||||||| |||||| || || ||
Sbjct 1815 ATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTTAC--AT 1758
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| ||| | ||| || || | || |||||||| |||||||| |||||
Sbjct 1757 --TGTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTT 1700
Query 34967 CACAAAGATCTGCAT 34981
||||||||||||||
Sbjct 1699 GACAAAGATCTGCAT 1685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324607317156504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |