Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2220 188 8e-43 >seq2220 Length=173857 Score = 188 bits (208), Expect = 8e-43 Identities = 391/579 (68%), Gaps = 11/579 (2%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| |||| | | ||| ||||| || || | |||||||| | ||| || | | Sbjct 65292 AGATGGCTAAATAAAAGACAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGT 65233 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || | | || ||||||| ||| | ||||| | |||||||||||| || Sbjct 65232 TCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCG 65173 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || || |||||||| || || || || || |||||||||||||||| | | Sbjct 65172 AAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAAT 65113 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | |||| || | | |||||| | ||||| || ||||| || || || Sbjct 65112 GTGGCATGTTTGTCAGATATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGT 65053 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 || | |||||| | || || ||| || ||||||| ||| || | || | Sbjct 65052 ATGGACTCTATTGCATCGAAAAGAAACTGCCGCTCATTGACATCCTTGA----TGAGGGT 64997 Query 19243 ATCAATAA--ACTGTACATTTCT--GAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 || |||| | || | | ||| ||||| || || || || || || || ||||| Sbjct 64996 GTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTA 64937 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 ||| |||| ||||||| ||||| || || | |||| | || |||| ||| ||||| Sbjct 64936 AAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATT 64877 Query 19359 AACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418 ||||| || || || || || || ||||| |||||| || ||||| ||||| Sbjct 64876 GACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATT 64817 Query 19419 TGAGGTTAAT---GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475 ||| |||| |||||||| || |||| || | || | ||| | |||||| | || Sbjct 64816 TGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGT 64757 Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||||||||||||||| |||||||| ||||||||||| || Sbjct 64756 CCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 Score = 113 bits (124), Expect = 5e-20 Identities = 353/541 (65%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 ||||| || | || || | || || || || || | ||||||||| || || | ||| Sbjct 63022 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACCGCGTTTC 63081 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 || | |||||| || || ||||| || ||||| ||||| ||||| || || || || || Sbjct 63082 TTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAT 63141 Query 19102 GCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCA 19161 || || | || ||| || | | | | | || | ||||| ||||||||||| || Sbjct 63142 GCTACCAATCGTTCAGCAAAGGTGGAACGTTGATCAGTTATCCACTTCAGTGCCCAGTCG 63201 Query 19162 GCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGC-TCATC 19220 ||||| || || || || || ||||| || | || || || | || ||| | || Sbjct 63202 GCCTTGCGCTTAACGCAGGGAATGGTCTCCATGGCATCGAAAAGGT--ATTCGCGTTGTC 63259 Query 19221 T-GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTA 19279 | | ||| || | ||| | || || | | ||| | || || |||||||| || | Sbjct 63260 TGGGATCCTTGATATAGGTGTCGATGAGGAGTGAGTAGGTCTCAGAGTGAATATTCTCCA 63319 Query 19280 TAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATC 19339 | || || || ||||| || || | ||||| | ||| || ||| | | || | Sbjct 63320 TCATAATTTGGAAACCGTAGAAGCACCGGGCTTCGGCGGCCTGAACCTCATTGGAGAAAC 63379 Query 19340 TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTT 19399 || || | |||||||| || || ||||| || || || || || | ||||||| Sbjct 63380 GCTCAACGAGGTTTTCATTGACGATGCCATCGGATGCAGCGAAGAAGGCGAGTACATGTG 63439 Query 19400 TAATAAAATG------TTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 || || || || |||| |||| || |||| |||| || ||||| | Sbjct 63440 ATATGAAGTGGCGCTCGTTGTCAT-TGAGACGGTTG--GTCCAGTCATGAACGTCTTTTG 63496 Query 19454 ATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATA 19513 | | ||| | || ||| | ||||| || || ||||| || || || ||||| | ||||| Sbjct 63497 AGAGATCCATCTCCTCAGCAGTCCAGAAGGATGCCTCGGCCTTCTTGTACATTTGCCATA 63556 Query 19514 T 19514 | Sbjct 63557 T 63557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562062123890520