Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6280 114 1e-19 seq4029 86.0 5e-11 >seq6280 Length=76176 Score = 114 bits (126), Expect = 1e-19 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||||||||| ||||| ||||| ||||||| ||||| || || |||| Sbjct 43301 ATGCTGTCATCACTGTACCAGCCTATTTCAATGATGCACAACGGCAAGCAACGAAGGATG 43360 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || | ||||| || || | |||||||| | ||||| |||||||| |||||||| | Sbjct 43361 CCGGTCAAATTGCGGGTCTCGAAGTTCTTCGGGTGATCAACGAACCTACGGCTGCTGCTC 43420 Query 550518 TTGCATATGGACTTGA 550533 |||| ||||| || || Sbjct 43421 TTGCCTATGGTCTGGA 43436 >seq4029 Length=68196 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || |||||||||||||||||||| || || || ||||| || || ||||| || |||||| Sbjct 67861 GGCATTCCTCCTGCTCCTCGTGGTGTTCCTCAGATTGAGGTCACCTTCGACATAGATGCC 67802 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || || || ||||| ||| |||| | ||| || Sbjct 67801 AACGGTATCTTGAACGTGTCTGCGTCTGACAA 67770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028944688200070