Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4212 127 2e-24 seq1236 91.5 1e-13 >seq4212 Length=20478 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || |||||||| || || || | ||| | || || | |||| Sbjct 2343 TGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTCAAGCTGC 2284 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| ||||| ||||| ||||||| || | ||||||||||| |||||| Sbjct 2283 TTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTC 2224 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | ||||| | ||||||||||| |||||| ||||| ||||| Sbjct 2223 GCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTG 2164 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||||||||| Sbjct 2163 AGGGTCTTGACGAAAATCTGCAT 2141 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || || ||||| || || | ||| | || || | |||||| || || || Sbjct 1876 CTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAA 1817 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || |||||||| || | |||| ||||||||||| ||||| |||||| Sbjct 1816 GATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTTACATT 1757 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||||||||||| ||| || ||||| ||||| | || || || Sbjct 1756 GTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGAC 1697 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 1696 AAAGATCTGCAT 1685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 ||||| ||| ||| || ||||| ||||| || || ||| | ||| |||| || | |||| Sbjct 2115 TGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAGCTGC 2056 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || || | |||| |||||||||||| ||||| Sbjct 2055 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTC 1996 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || |||| |||||| |||| || ||||| || ||||| Sbjct 1995 GCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCGTG 1936 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 1935 AGGGTCTTGACGAAGATCTGCAT 1913 >seq1236 Length=761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||||||||| || ||||| || || || ||||| |||| |||| |||||||| Sbjct 6 TCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTA 65 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || ||| | | || || || | ||| ||||||| ||| || Sbjct 66 TCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTGATG 125 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| | ||||| ||||| |||||||| Sbjct 126 GTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380906758696689