Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2220 237 3e-57 >seq2220 Length=173857 Score = 237 bits (262), Expect = 3e-57 Identities = 394/566 (70%), Gaps = 5/566 (1%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| ||| |||||||| |||||| || || || |||||||||||| ||||||||| Sbjct 62993 AGAGCAAGCAAGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGA 63052 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | |||||||||||||| || | | ||||||||||| || | || || ||||||| Sbjct 63053 AAGTGAGACCAGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAG 63112 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| ||||| || || ||||| || | | || | |||| | | Sbjct 63113 AGAAGAAGATACCCTCGACGGCAGCGAATGCTACCAATCGTTCAGC-AAAGGTGGAACGT 63171 Query 48303 TG-TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 || || | ||||| || |||||||| ||||| ||| | ||| || || ||||| Sbjct 63172 TGATCAGTTATCCACTTCAGTGCCCAGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCC 63231 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 ||||| ||| || | | || | | | ||| | |||||| || || | Sbjct 63232 ATGGCATCGAAAAGGTATTCGCGTTGTCTGGGATCCTTGATATAGGTGTCGATGAGGAGT 63291 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | ||| |||||||||| | |||||| || || ||||| ||||||||| || ||| Sbjct 63292 GAGTAGGTCTCAGAGTGAATATTCTCCATCATAATTTGGAAACCGTAGAAGCACCGGGCT 63351 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 || |||| || || ||||||| | ||| | || || |||||||| || ||||| Sbjct 63352 TCGGCGGCCTGAACCTCATTGGAGAAACGCTCAACGAGGTTTTCATTGACGATGCCATCG 63411 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA 48601 || ||||| |||||||| || |||||| | ||| ||||||||||||| ||||| Sbjct 63412 GATGCAGCGAAGAAGGCGAGTACATGTGATATGAAGTGGCGCTCGTTGTCATTGAGACGG 63471 Query 48602 T---TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 | ||||| | || |||||||| || |||| || || ||||||||||||| || Sbjct 63472 TTGGTCCAGTCATGAACGTCTTTTGAGAGATCCATCTCCTCAGCAGTCCAGAAGGATGCC 63531 Query 48659 AGTGCTTTTTTGTACATGCCCCATAT 48684 || || |||||||| |||||| Sbjct 63532 TCGGCCTTCTTGTACATTTGCCATAT 63557 Score = 156 bits (172), Expect = 8e-33 Identities = 369/557 (66%), Gaps = 3/557 (1%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||||| || ||||| || |||||||| |||| ||||| ||| Sbjct 65274 CAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGG 65215 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || |||||||||||| || | |||||||| || || |||||| Sbjct 65214 CCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAG 65155 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || || || || || | |||| | || | ||||| || Sbjct 65154 ATGCCCTCAACAGCAGCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGAT 65095 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| | ||||||||||||||| ||| | | || || | |||||| || | Sbjct 65094 ATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCG 65035 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || || || | |||| | ||| | ||| || || || || || Sbjct 65034 AAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTC 64975 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || || || | ||||| || ||| ||||||||||| ||| | || || | | Sbjct 64974 TCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATC 64915 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || || || | || || | ||| | |||||||||||||||||| || || || ||||| Sbjct 64914 TGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCG 64855 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT---GAGAGCATTCCAG 48607 ||||| || | |||||| | |||||| || || || || | | | ||||||| Sbjct 64854 AAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAG 64795 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | | ||| || || |||| |||||| | ||||| || || || |||||| Sbjct 64794 TCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTT 64735 Query 48668 TTGTACATGCCCCATAT 48684 ||||||||| ||| || Sbjct 64734 TTGTACATGTTCCAAAT 64718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931455447845120