Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2220 159 6e-34 >seq2220 Length=173857 Score = 159 bits (176), Expect = 6e-34 Identities = 393/581 (68%), Gaps = 29/581 (5%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||||||||| | || |||||| || || ||||| ||||| Sbjct 63557 ATATGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACTGCTGAGGAGATGGATCTC 63498 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGAC---GAGCAGCATTT----TC 25588 | || ||| | | | |||| || | || ||| ||| |||| || || || Sbjct 63497 TCAAAAGACGTTCATGACTGG-ACCAACCGTCTCAATGACAACGAGCGCCACTTCATATC 63439 Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 || |||| | || ||||| || || || ||||| || || || || || || | Sbjct 63438 ACATGTAC----TCGCCTTCTTCGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTG 63383 Query 25649 AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 || | ||| ||| || || ||| || || ||| ||| |||||||||||||| || Sbjct 63382 AGCGTTTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGCTTCTACGGTTTCCAAATTA 63323 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAG 25765 || || ||| | ||||||||| || | || || || || || || | | Sbjct 63322 TGATGGAGAATATTCACTCTGAGACCTACTCA---CTCCTCATCGACACCTATATCAAGG 63266 Query 25766 ACGTCGCCGAGA--GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAG 25823 | || | || | | || || || | |||||| ||| ||| ||| || | ||| | Sbjct 63265 A--TCCCAGACAACGCGAATACCTTTTCGATGCCATGGAGACCATTCCCTGCGTTAAGCG 63208 Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGC 25882 ||||| ||||| |||||||||| ||| | || | | || |||| || || Sbjct 63207 CAAGGCCGACTGGGCACTGAAGTGGAT-AACTGATCAACGTTCCACCTTTGCTGAACGAT 63149 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 ||||||| || ||||| || ||||| ||||| ||| || || ||||| ||||||||| Sbjct 63148 TGGTAGCATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCT 63089 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAG 26000 |||||||| | | | || | |||||| || || ||||| |||||||||||||||||| | Sbjct 63088 GGCTCAAGAA-ACGCGGTCTCATGCCTGGTCTC-ACTTTCTCCAACGAGCTCATCAGCCG 63031 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || |||||| | |||| || ||||| ||| |||||| || Sbjct 63030 TGATGAGGGTATGCACACCGACTTTGCTTGCTTGCTCTTCA 62990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || || || || ||||||||||| ||||||||||| || |||||| || || | || Sbjct 65123 CGACTAGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATA 65182 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||||||| || || ||||| || || || || ||||| |||||||| Sbjct 65183 TTCTGGCTCAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGT 65242 Query 25999 AGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 | |||||||| | |||| ||| ||||| || || Sbjct 65243 CGTGACGAGGGGATGCACACAGACTTTGCTTGTCT 65277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928767671049920