Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq4824 91.5 1e-12
seq4581 91.5 1e-12
seq4212 87.8 1e-11
>seq4824
Length=32535
Score = 91.5 bits (100), Expect = 1e-12
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || || ||||| || || || || |||||||| | || ||
Sbjct 152 ACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGT 93
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| |||||| | ||||| || || || ||||| || |||||||||||||| || ||
Sbjct 92 ACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCC 33
Query 480671 TTCCTTGTCTTGAATCTT 480688
||||||||| ||||||||
Sbjct 32 TTCCTTGTCCTGAATCTT 15
>seq4581
Length=31643
Score = 91.5 bits (100), Expect = 1e-12
Identities = 139/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 480576 GTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCA 480635
|||||||| | | || |||||| || || || |||| || |||| ||||| | |||
Sbjct 30963 GTACTTTCATATGCAATATTATATTCCGCGAGTGTTCGGTCGTCTTGAAGTTCCCCTCCG 31022
Query 480636 GCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTG 480695
||||| || || || || || || || ||||||||||| |||||||||| | || ||||
Sbjct 31023 GCAAAGATTAGGCGCTGCTGGTCCGGCGGAATTCCTTCTTTGTCTTGAA-CCTTGGTTTT 31081
Query 480696 ACAGCT-TCAATAGTAT---CAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
| ||| | || |||| || |||| || || | || || || || || |||||
Sbjct 31082 AAGGCTGTATATGGTATGGGAAGCGTGT---GTGTCGATAGTGATTGTCTTTCCCGTGAG 31138
Query 480752 AGTCTTAACGAAAA 480765
|||||||| ||||
Sbjct 31139 TGTCTTAACAAAAA 31152
>seq4212
Length=20478
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || || ||||| ||| ||||| | |||||||| | || ||
Sbjct 1906 ACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGT 1847
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| ||||| ||||| ||||| || || || || ||||| ||||||||||| ||
Sbjct 1846 ACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACC 1787
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || ||||| || ||| || || || |||| | | | || |
Sbjct 1786 CTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCA-CCTCCA 1728
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || ||||| || ||||| ||||| || || || ||
Sbjct 1727 GCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTG 1688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267894249498164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |