Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4824 91.5 1e-12 seq4581 91.5 1e-12 seq4212 87.8 1e-11 >seq4824 Length=32535 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| || || || || |||||||| | || || Sbjct 152 ACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGT 93 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| || || || ||||| || |||||||||||||| || || Sbjct 92 ACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCC 33 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| |||||||| Sbjct 32 TTCCTTGTCCTGAATCTT 15 >seq4581 Length=31643 Score = 91.5 bits (100), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 480576 GTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCA 480635 |||||||| | | || |||||| || || || |||| || |||| ||||| | ||| Sbjct 30963 GTACTTTCATATGCAATATTATATTCCGCGAGTGTTCGGTCGTCTTGAAGTTCCCCTCCG 31022 Query 480636 GCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTG 480695 ||||| || || || || || || || ||||||||||| |||||||||| | || |||| Sbjct 31023 GCAAAGATTAGGCGCTGCTGGTCCGGCGGAATTCCTTCTTTGTCTTGAA-CCTTGGTTTT 31081 Query 480696 ACAGCT-TCAATAGTAT---CAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 | ||| | || |||| || |||| || || | || || || || || ||||| Sbjct 31082 AAGGCTGTATATGGTATGGGAAGCGTGT---GTGTCGATAGTGATTGTCTTTCCCGTGAG 31138 Query 480752 AGTCTTAACGAAAA 480765 |||||||| |||| Sbjct 31139 TGTCTTAACAAAAA 31152 >seq4212 Length=20478 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || || ||||| ||| ||||| | |||||||| | || || Sbjct 1906 ACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGT 1847 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| ||||| ||||| || || || || ||||| ||||||||||| || Sbjct 1846 ACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACC 1787 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| || || || |||| | | | || | Sbjct 1786 CTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCA-CCTCCA 1728 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || ||||| ||||| || || || || Sbjct 1727 GCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTG 1688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267894249498164