Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4763 105 9e-18 seq5382 87.8 2e-12 >seq4763 Length=6291 Score = 105 bits (116), Expect = 9e-18 Identities = 216/318 (68%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 47851 TAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCT 47910 ||||||| ||||||||||||| | | ||||| | || || || || || |||| Sbjct 3312 TAATCTCAC-CATGTCCCCAGTCTCTTTGCGCATCGATGTTACCGAGGTACAAGCAGTGC 3254 Query 47911 TGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCA 47970 ||||| || | ||| || | || || |||| || | || || || || Sbjct 3253 TGCTTGCCGACGCTGATATCTGCAACGGCCCTGCTAATTTTCCTCGTGACGAAGGTCCTC 3194 Query 47971 CCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGAT 48030 || || || || || || || |||||||| ||| |||| |||||||||||||||| Sbjct 3193 CCTCGCCTCGGGCTCTCGTGGTTGAAAAGAATTCCATTACACGCATACATTCCGTATGCC 3134 Query 48031 TCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAAC 48088 || || ||||| | || |||||||| | || || || ||||| || || || | Sbjct 3133 TCGCGGTAGTTAACCGTA--ATCCAGTATGCGTACAGCTTGGCAACGCCGTACGGGCTGC 3076 Query 48089 GTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCAC 48148 | ||||||||||| || ||||| ||||||| ||||| || || || || || || Sbjct 3075 GAGGATAGAAAGGCGTCGTCTCGCTCTGTGGGGTCTCAACGACTTTTCCGTAGAGCTCCG 3016 Query 48149 TGGTGGATGCTTGATAGA 48166 ||| || ||||| |||| Sbjct 3015 AGGTCGAGGCTTGGTAGA 2998 >seq5382 Length=4005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 212/318 (67%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 47851 TAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCT 47910 ||||||| ||||||||||||| | | ||||| | || || || || || |||| Sbjct 3710 TAATCTCAC-CATGTCCCCAGTCTCTTTGCGCATCGATGTTACCGAGGTACAAGCAGTGC 3652 Query 47911 TGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCA 47970 ||||| || | ||| || | || || |||| || | || || || || Sbjct 3651 TGCTTGCCGACGCTGATATCTGCAACGGCCCTGCTAATTTTCCTCGTGACGAAGGTCCTC 3592 Query 47971 CCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGAT 48030 || || || || || || || ||||| || ||| |||| |||||| | ||||| | Sbjct 3591 CCTCGCCTCGGGCTCTCGTGGTTGAAAAGGATTCCATTACACGCATACGTCCCGTACGCC 3532 Query 48031 TCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAAC 48088 || || ||||| | || |||||||| | || || || || ||||| || | | Sbjct 3531 TCGCGGTAGTTAACCGTA--ATCCAGTATGCGTACAGCTTGGCGACACCGTACGTGCTGC 3474 Query 48089 GTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCAC 48148 | ||||||||||| |||||||| ||||||| ||||| || || || || || || Sbjct 3473 GAGGATAGAAAGGCGTGGTCTCGCTCTGTGGGGTCTCGACGACTTTTCCGTAGAGCTCTG 3414 Query 48149 TGGTGGATGCTTGATAGA 48166 | | |||||||| |||| Sbjct 3413 AGATCGATGCTTGGTAGA 3396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665439139008760