Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq2220 104 3e-17
>seq2220
Length=173857
Score = 104 bits (114), Expect = 3e-17
Identities = 365/567 (64%), Gaps = 7/567 (1%)
Strand=Plus/Minus
Query 18150 ATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAA 18209
|||| | ||| ||||| || ||||| | || || || | || | |||||| |
Sbjct 65282 ATAAAAGACAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGA 65223
Query 18210 ACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAG 18269
| | | || ||||| | || | ||||| ||||| ||||| ||||||||| || |
Sbjct 65222 AAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGG 65163
Query 18270 AAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328
||||||| || |||||||| ||| || || || | || || ||| || || |
Sbjct 65162 AAAAGAAGATGCCCTCAACAGCA-GCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGT 65104
Query 18329 TTGCTCAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387
||| |||| ||||||| | ||||| ||| | | | ||||| |||
Sbjct 65103 TTG-TCAGATATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTC 65045
Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAA 18447
||| |||| || | | | || ||| ||| || || |||||||| | |
Sbjct 65044 TATTGCATCGAAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGGTGTCGATAAGGAG 64985
Query 18448 AGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGC 18507
||||| | || ||||| ||| | || || || || || | ||||| ||| |||
Sbjct 64984 TGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATCGAGC 64925
Query 18508 CTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567
|| | | |||| |||| | |||| | || |||| ||||||||| ||||| |||||
Sbjct 64924 TTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGCCGTC 64865
Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT 18627
| | ||||| || || ||||||| | |||||||| |||||| | ||
Sbjct 64864 GGATGCAGCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATTTGAAGTTAGGCG 64805
Query 18628 G---TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGA 18684
| ||||| || || || | || ||||| | |||||| | ||||||||||| |
Sbjct 64804 GGTATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGC 64745
Query 18685 TTCGGCCTGTTTGTACATTTTATAAAT 18711
||||| | ||||||||| || ||||
Sbjct 64744 CTCGGCTTTTTTGTACATGTTCCAAAT 64718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731811227178800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |