Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2220 104 3e-17 >seq2220 Length=173857 Score = 104 bits (114), Expect = 3e-17 Identities = 365/567 (64%), Gaps = 7/567 (1%) Strand=Plus/Minus Query 18150 ATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAA 18209 |||| | ||| ||||| || ||||| | || || || | || | |||||| | Sbjct 65282 ATAAAAGACAAGCAAAGTCTGTGTGCATCCCCTCGTCACGACTGATGAGTTCGTTTGAGA 65223 Query 18210 ACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAG 18269 | | | || ||||| | || | ||||| ||||| ||||| ||||||||| || | Sbjct 65222 AAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAATATAGATGCGAAAGAACCGG 65163 Query 18270 AAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 ||||||| || |||||||| ||| || || || | || || ||| || || | Sbjct 65162 AAAAGAAGATGCCCTCAACAGCA-GCAAAAGCAACTAGTCGGGTAGCGAATGTGGCATGT 65104 Query 18329 TTGCTCAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387 ||| |||| ||||||| | ||||| ||| | | | ||||| ||| Sbjct 65103 TTG-TCAGATATCCATCGTAACGCCCAGTCTGCCTTGCGCTTAACGGCGGGTATGGACTC 65045 Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAA 18447 ||| |||| || | | | || ||| ||| || || |||||||| | | Sbjct 65044 TATTGCATCGAAAAGAAACTGCCGCTCATTGACATCCTTGATGAGGGTGTCGATAAGGAG 64985 Query 18448 AGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGC 18507 ||||| | || ||||| ||| | || || || || || | ||||| ||| ||| Sbjct 64984 TGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGGAACCCGTAAAAGCATCGAGC 64925 Query 18508 CTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 || | | |||| |||| | |||| | || |||| ||||||||| ||||| ||||| Sbjct 64924 TTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGATTCTCATTGACTATGCCGTC 64865 Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT 18627 | | ||||| || || ||||||| | |||||||| |||||| | || Sbjct 64864 GGATGCAGCGAAGAAAGCTAAAACATGTGAGATGAAATGACGTTCATTTGAAGTTAGGCG 64805 Query 18628 G---TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGA 18684 | ||||| || || || | || ||||| | |||||| | ||||||||||| | Sbjct 64804 GGTATTCCAGTCGATAATGTCAGTGGAGAGATCCATTTCTTCGGCGGTCCAAAAAGAAGC 64745 Query 18685 TTCGGCCTGTTTGTACATTTTATAAAT 18711 ||||| | ||||||||| || |||| Sbjct 64744 CTCGGCTTTTTTGTACATGTTCCAAAT 64718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731811227178800