Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4145 111 5e-19 seq2032 91.5 4e-13 seq2220 86.0 2e-11 >seq4145 Length=52608 Score = 111 bits (122), Expect = 5e-19 Identities = 224/326 (69%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 302554 TCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTT 302613 ||||| || ||| | ||| |||| ||||| | ||||||||| || || || ||| Sbjct 44325 TCATAGTGAACCATGACGTCCTCCAGTGCCTTGACAAGACGACGCTGGATGTACCCGGTT 44266 Query 302614 GTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAAT 302673 | ||| || || || |||||||| ||||| | | ||| |||||||||||||||| Sbjct 44265 TCTGCTGTCTTGACGGCAGTATCAATGAGACCTTCTCTTCCAGCCATAGCATGGAAGAAA 44206 Query 302674 AGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GG 302731 | ||| | ||| ||| ||||||| | | | ||| |||| ||||| |||||||| || || Sbjct 44205 AACTCCTGCGG-CGTCAGCCCCCGCAGATACGAGTTCTCGACGAAGCCACGCGCTTCCGG 44147 Query 302732 GC-GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 || ||| ||| |||||| || || || ||||| | || | ||| | || ||| Sbjct 44146 GCTGAA--GTCATCCTTGGTGAAATGGGGAAGGGTACGGTGACGGAAACCGAACGGAATA 44089 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCA 302850 || || || || ||||||| || | || | ||| ||||| || || | || Sbjct 44088 CGACGACCCTCGACACTCTGCTGCCCAACACAGACAGACATTTGCGAGATGTTGATATAT 44029 Query 302851 CTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||||||||| || | ||||| Sbjct 44028 GAACCCTTGGAGCCCGCCGTGACCAT 44003 >seq2032 Length=71628 Score = 91.5 bits (100), Expect = 4e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 251486 CACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAG 251545 |||| || ||||||||||||||||| |||||||| || ||||| ||||||||||| || Sbjct 70646 CACCATGCGAAATCATACAATCACGTTCCATTTCTCCAAAACGGAGACCACCATCACGGC 70587 Query 251546 CCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTT 251605 | |||||| | || || || || | | || |||||| | | ||| ||| Sbjct 70586 TACGACCCTCCACCGGTTGCCGCGTCAAGATCTGCACAGGACCTCTTGCGCGCGAATGGA 70527 Query 251606 GCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 |||||| | |||||| || || ||||| || ||| | | ||| |||| Sbjct 70526 TCTTATCGTCTACCATGTGTTTAAGACGTTGATAGTACGTGGGGCCGA 70479 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| |||||||| || || ||||| |||||||||| ||||| || | ||| | Sbjct 70289 CGATGGTCATACGCGATGGGATGGCATGAGGATTGATGACAATGTCCGGGACAATTCCCT 70230 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCCG 251961 | || ||||||||||| || | || || ||| || | |||||||||||||| || ||| Sbjct 70229 CCGCGGTGAAGGGCATGTCTTCTTG-TCGGTAAGTGATACCAATAGTTCCCTTCTGACCG 70171 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 || ||||| |||||| || ||||| Sbjct 70170 TGGCGAGATGCGAACTTGTCGCCAAT 70145 >seq2220 Length=173857 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133460 GACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCT 133519 |||||||| | |||||| ||||| | ||| | || ||||| || || |||||| Sbjct 65075 GACTGGGCGTTACGATGGATATCTGACAAACATGCCACATTCGCTACCCGACTAGTTGCT 65134 Query 133520 TTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAA 133579 ||||||| || |||||||| || || ||| | ||| ||||| || ||||| ||| Sbjct 65135 TTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGGCTCAAA 65194 Query 133580 AAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCA 133639 |||||||| | | || || || ||| || |||||||| || | ||||||| Sbjct 65195 AAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGACGAGGGG 65254 Query 133640 CTTCACACCGAATTTGC 133656 | ||||| || ||||| Sbjct 65255 ATGCACACAGACTTTGC 65271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471692328544691