Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2220 131 2e-24 seq4167 87.8 2e-11 >seq2220 Length=173857 Score = 131 bits (144), Expect = 2e-24 Identities = 208/288 (72%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || || ||||| | |||||| || | ||| || |||||||| ||||| || Sbjct 63021 ACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACCGCGTTT 63080 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| || ||| ||||| ||||| ||||||||||| || | Sbjct 63081 CTTGAGCCAGAAGATGGATGCA-AAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGA 63139 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | | | | || || ||||||||| || | | | | |||||||||| |||| Sbjct 63140 ATGCTACCAATCGTTCAGCAAAGGTG--GA-ACGTTGATCAGTTATCCACTTCAGTGCCC 63196 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC-GCGAAAGAGGTGGTCCTTT 869416 |||||||||| | | || | || | || || ||||| ||||| |||| || | Sbjct 63197 AGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCCATGGCATCGAAA-AGGTATTCGCGT 63255 Query 869417 TCGGCCGGG-TCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | | ||| ||||||| |||||||||||| ||||| || |||||||| Sbjct 63256 T-GTCTGGGATCCTTGATATAGGTGTCGATGAGGAGTGAGTAGGTCTC 63302 Score = 120 bits (132), Expect = 4e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 || ||| |||||| ||||| |||||||| | |||||||||| ||||| | ||| Sbjct 62675 ACACGCTTCTCGAAGAAGTTCGTCTTGCCTTGTAGCGAGATCATGTCCATGAAGTCGAAG 62734 Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828 || |||| | ||||| ||| ||| || |||||| | || | |||||| |||||| Sbjct 62735 GGATTGGTAGAGTTGTACACCTTCTCGTTACCCAGCGACACTAGTAAGCGGTCTGCGACA 62794 Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAg 868872 |||||||||||||||| |||||| |||||||||||| ||||| Sbjct 62795 AACTCGATGTACTGGCGCATGAGCTTGGCGTTCATGCCAATGAG 62838 >seq4167 Length=37737 Score = 87.8 bits (96), Expect = 2e-11 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 19046 GGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGA 19105 |||| ||| || || || ||||||||||| |||||| || ||| |||| ||||| || Sbjct 29915 GGACTCCATTGGTGGAACAGTGACGTGCGTTATTCGCAATGTCCCGTCAGGTCTCGGAGA 29974 Query 19106 GCCGTGCTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 ||| || ||| |||||| ||||||| || || || || ||| |||| || || |||| Sbjct 29975 GCC-TGTTTTCGACAAGTTCGAGGCGAAACTTGCACAAGCTATGATGTCAATTCCTGCCA 30033 Query 19165 CCAAGGGATTCGAGATTGGC 19184 | |||| |||||| | ||| Sbjct 30034 CGAAGGCTTTCGAGGTCGGC 30053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106594044310831