Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2220 131 2e-24
seq4167 87.8 2e-11
>seq2220
Length=173857
Score = 131 bits (144), Expect = 2e-24
Identities = 208/288 (72%), Gaps = 9/288 (3%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || || ||||| | |||||| || | ||| || |||||||| ||||| ||
Sbjct 63021 ACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACCGCGTTT 63080
Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297
||||||||| ||||||| ||| || ||| ||||| ||||| ||||||||||| || |
Sbjct 63081 CTTGAGCCAGAAGATGGATGCA-AAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGA 63139
Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357
| | | | || || ||||||||| || | | | | |||||||||| ||||
Sbjct 63140 ATGCTACCAATCGTTCAGCAAAGGTG--GA-ACGTTGATCAGTTATCCACTTCAGTGCCC 63196
Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC-GCGAAAGAGGTGGTCCTTT 869416
|||||||||| | | || | || | || || ||||| ||||| |||| || |
Sbjct 63197 AGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCCATGGCATCGAAA-AGGTATTCGCGT 63255
Query 869417 TCGGCCGGG-TCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| | | ||| ||||||| |||||||||||| ||||| || ||||||||
Sbjct 63256 T-GTCTGGGATCCTTGATATAGGTGTCGATGAGGAGTGAGTAGGTCTC 63302
Score = 120 bits (132), Expect = 4e-21
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768
|| ||| |||||| ||||| |||||||| | |||||||||| ||||| | |||
Sbjct 62675 ACACGCTTCTCGAAGAAGTTCGTCTTGCCTTGTAGCGAGATCATGTCCATGAAGTCGAAG 62734
Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828
|| |||| | ||||| ||| ||| || |||||| | || | |||||| ||||||
Sbjct 62735 GGATTGGTAGAGTTGTACACCTTCTCGTTACCCAGCGACACTAGTAAGCGGTCTGCGACA 62794
Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAg 868872
|||||||||||||||| |||||| |||||||||||| |||||
Sbjct 62795 AACTCGATGTACTGGCGCATGAGCTTGGCGTTCATGCCAATGAG 62838
>seq4167
Length=37737
Score = 87.8 bits (96), Expect = 2e-11
Identities = 105/140 (75%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 19046 GGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGA 19105
|||| ||| || || || ||||||||||| |||||| || ||| |||| ||||| ||
Sbjct 29915 GGACTCCATTGGTGGAACAGTGACGTGCGTTATTCGCAATGTCCCGTCAGGTCTCGGAGA 29974
Query 19106 GCCGTGCTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
||| || ||| |||||| ||||||| || || || || ||| |||| || || ||||
Sbjct 29975 GCC-TGTTTTCGACAAGTTCGAGGCGAAACTTGCACAAGCTATGATGTCAATTCCTGCCA 30033
Query 19165 CCAAGGGATTCGAGATTGGC 19184
| |||| |||||| | |||
Sbjct 30034 CGAAGGCTTTCGAGGTCGGC 30053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106594044310831
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |