Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4212 122 6e-23 seq4824 84.2 1e-11 >seq4212 Length=20478 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||||||||| ||||| || || | || | || Sbjct 2124 AGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCT 2065 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 2064 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCT 2005 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| |||| | ||| | ||| || || | || || ||| Sbjct 2004 TGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTC 1945 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 1944 TTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 120 bits (132), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||| ||||| | |||||||||||||| || || ||||| || || |||| |||| || Sbjct 2350 GACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCCTC 2291 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 || ||||||||||| |||||||| || ||||| || |||| | ||||||||||| | Sbjct 2290 AAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 2231 Query 34888 TATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGG 34943 || || ||||| || | ||||| || | ||| || || | || |||| Sbjct 2230 AATCTTCGCCTTGAC--AT--TGTCGATGGTGTCTGATGACTCCACCTCCAACGTAATGG 2175 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || |||||||||||||| || || ||||||||| Sbjct 2174 TTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||| ||||| |||||||| || || || | || |||| Sbjct 1896 AGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCC 1837 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || || ||||| | || | ||||||||||| Sbjct 1836 TCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCC 1777 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| ||| | ||| || || | || || Sbjct 1776 TGGATCTTCGCCTTTAC--AT--TGTCGATGGTGTCAGACGACTCCACCTCCAGCGTGAT 1721 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || |||||||||||||| ||||||||||||||| Sbjct 1720 GGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 1684 >seq4824 Length=32535 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| |||||||||||||||||| || || || | || |||| Sbjct 142 AGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGTACGACCATCT 83 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || |||||||| || || || || || | || | || |||||||| Sbjct 82 TCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCCTTCCTTGTC 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325666431402017