Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4212 125 7e-24 seq1236 82.4 7e-11 >seq4212 Length=20478 Score = 125 bits (138), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || || |||||| || ||| ||| | ||||| |||||||||| Sbjct 1882 GGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTACGACCA-TCCTCAAGCTGCTTGC 1824 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||| ||||| ||||| || || |||||||| |||||| || Sbjct 1823 CAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCT 1764 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | | |||||| || | |||| ||||||||| || || | Sbjct 1763 TTACATTGTCGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTTTGCCCGTGAGGG 1704 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || ||||||||| || Sbjct 1703 TCTTGACAAAGATCTGCATGCCT 1681 Score = 122 bits (134), Expect = 8e-23 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCT 133515 |||| |||||||| ||||| || ||||| ||| | || |||| ||| ||||||| Sbjct 2115 TGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGT--ACGACCGTCTTCGAGCT 2058 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | ||||| ||||||||||||||||| ||||| |||||||| ||||| Sbjct 2057 GCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCT 1998 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | | |||||| || | |||| || || || | Sbjct 1997 TCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCG 1938 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || ||||| |||||||| Sbjct 1937 TGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| |||||||| || || |||| ||| | ||||| |||||||| || || Sbjct 2332 CTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCA-TCCTCAAGCTGCTTTCCGGCAA 2274 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || |||||||| || || ||||| || |||||||| ||||| ||||| | Sbjct 2273 AGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACAT 2214 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||| | | |||||| || | || | |||||| || || || || || | Sbjct 2213 TGTCGATGGTGTCTGATGACTCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGA 2154 Query 133648 CGAAAATCTGCATG 133661 |||||||||||||| Sbjct 2153 CGAAAATCTGCATG 2140 >seq1236 Length=761 Score = 82.4 bits (90), Expect = 7e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||||||| | |||| ||| | ||||| |||||||||| Sbjct 191 GGTAGACTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCA-TCCTCCAGCTGCTTGC 249 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGAT 133555 | ||| | ||||| ||||| |||||||| ||||| Sbjct 250 CAGCGAAGATGAGGCGCTGTTGGTCGGGTGGGAT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483380657945320