Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4212 123 6e-23 seq1236 95.1 3e-14 seq4642 93.3 1e-13 >seq4212 Length=20478 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || ||||| ||||| |||| ||||| |||||| Sbjct 1688 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCTGAC 1747 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||| || || || || || ||| || ||| || Sbjct 1748 ACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAACAG 1807 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| | || ||||| | || || ||||||| ||| || Sbjct 1808 CGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAACATC 1867 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||||||| |||||||| ||| | | ||||| Sbjct 1868 CAGAAAGAGTCTACCCTTCACCTCGTTCTTCGTCTTCG 1905 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| ||||||||||| |||||| Sbjct 1916 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCTGAC 1975 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || ||| || ||| || Sbjct 1976 ACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAG 2035 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | ||||| || | ||| | |||| |||||| | Sbjct 2036 CGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAACATT 2095 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 2096 CAGAAGGAGTCCACTCTACACCTCGT 2121 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| || || ||||| ||||| || ||| Sbjct 2144 CAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCAGAC 2203 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || |||||| || Sbjct 2204 ACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 2263 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||||||| | || ||||| | || || | || ||||| || Sbjct 2264 CGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAATATC 2323 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||| || || |||||||| || | ||||| Sbjct 2324 CAGAAGGAGAGCACACTCCACCTTGTCTTACGTCTTCG 2361 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| |||||||| |||||||||||||||| ||||| || | || || Sbjct 1905 CGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTA 1846 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || |||||||| || |||||||| || || ||||| Sbjct 1845 CGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTG 1802 >seq1236 Length=761 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| ||||| ||||| || || || ||| Sbjct 157 CAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCCGAC 98 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || || || ||| |||||| ||| Sbjct 97 ACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAACAA 38 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGG 206327 | || ||||| || |||||||||||||||||||| Sbjct 37 CGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGG 3 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 || |||||||| || |||||| |||| ||||| | || | ||||||||||| ||||| Sbjct 262 CTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACGCTCTCCGATTACAACATCCAG 203 Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| ||||||||||| ||| | || || Sbjct 202 AAGGAGTCTACCCTTCACCTTGTCTTGCGTCTCCG 168 >seq4642 Length=14046 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 173203 CCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGA 173262 || ||||| |||||| ||||||||||| ||||||| |||| |||| || ||||| |||| Sbjct 9701 CCCTCTTTCTCGTATTTCTCATAGAGGGCTTCGAATTCCTCGCCGTGAACTTCGTGAAGA 9760 Query 173263 CCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCAT 173321 | || ||||| || ||||| || || ||| ||| ||| || |||||| | ||||| Sbjct 9761 TCAGGCGCTTCATTGGGACAGAAAAGCGACCAGTTTTCATTGGCCTCGACACGTTTCAT 9819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181720211169203