Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 123 6e-23
seq1236 95.1 3e-14
seq4642 93.3 1e-13
>seq4212
Length=20478
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || ||||| || ||||| ||||| |||| ||||| ||||||
Sbjct 1688 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCTGAC 1747
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| |||||| ||||| || || || || || ||| || ||| ||
Sbjct 1748 ACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAACAG 1807
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||| || |||||| | || ||||| | || || ||||||| ||| ||
Sbjct 1808 CGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAACATC 1867
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||||||||| |||||||| ||| | | |||||
Sbjct 1868 CAGAAAGAGTCTACCCTTCACCTCGTTCTTCGTCTTCG 1905
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || || |||||||| ||||||||||| ||||||
Sbjct 1916 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCTGAC 1975
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| ||||| || || || ||| || ||| ||
Sbjct 1976 ACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAG 2035
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||||||||| |||||| | ||||| || | ||| | |||| |||||| |
Sbjct 2036 CGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAACATT 2095
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| ||||| ||||| ||
Sbjct 2096 CAGAAGGAGTCCACTCTACACCTCGT 2121
Score = 91.5 bits (100), Expect = 3e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || ||||| || || ||||| ||||| || |||
Sbjct 2144 CAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCAGAC 2203
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || || |||||| ||
Sbjct 2204 ACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 2263
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||| |||||||||||| | || ||||| | || || | || ||||| ||
Sbjct 2264 CGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAATATC 2323
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| ||| || || |||||||| || | |||||
Sbjct 2324 CAGAAGGAGAGCACACTCCACCTTGTCTTACGTCTTCG 2361
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | | ||| |||||||| |||||||||||||||| ||||| || | || ||
Sbjct 1905 CGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTA 1846
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| ||||| || |||||||| || |||||||| || || |||||
Sbjct 1845 CGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTG 1802
>seq1236
Length=761
Score = 95.1 bits (104), Expect = 3e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| |||||| ||||| || ||||| ||||| ||||| || || || |||
Sbjct 157 CAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCCGAC 98
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||| || || || || || ||| |||||| |||
Sbjct 97 ACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAACAA 38
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGG 206327
| || ||||| || ||||||||||||||||||||
Sbjct 37 CGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGG 3
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355
|| |||||||| || |||||| |||| ||||| | || | ||||||||||| |||||
Sbjct 262 CTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACGCTCTCCGATTACAACATCCAG 203
Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||||| ||||||||||| ||| | || ||
Sbjct 202 AAGGAGTCTACCCTTCACCTTGTCTTGCGTCTCCG 168
>seq4642
Length=14046
Score = 93.3 bits (102), Expect = 1e-13
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 173203 CCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGA 173262
|| ||||| |||||| ||||||||||| ||||||| |||| |||| || ||||| ||||
Sbjct 9701 CCCTCTTTCTCGTATTTCTCATAGAGGGCTTCGAATTCCTCGCCGTGAACTTCGTGAAGA 9760
Query 173263 CCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCAT 173321
| || ||||| || ||||| || || ||| ||| ||| || |||||| | |||||
Sbjct 9761 TCAGGCGCTTCATTGGGACAGAAAAGCGACCAGTTTTCATTGGCCTCGACACGTTTCAT 9819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181720211169203
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |