Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2220 174 2e-37 >seq2220 Length=173857 Score = 174 bits (192), Expect = 2e-37 Identities = 356/510 (70%), Gaps = 18/510 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| || ||||||||||| ||||| ||||| || |||||| | || | Sbjct 63558 GATATGGCAAATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACTGCTGAGGAGATGGATC 63500 Query 1455835 TCGGCGCCGACACGGTCC--ACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCAT 1455889 || ||| | || ||||| || || | ||| |||||||||| ||||| Sbjct 63499 TCTCAAAAGAC--GTTCATGACTGGACCAACCGTCTCAATGACAACGAGCGCCACTTCAT 63442 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 || || |||||||| || ||| || |||||||||||| || ||||| | | Sbjct 63441 ATCACATGTACTCGCCTTCTT-CGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTG 63383 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 || || || ||||| || | || || || | || ||||| ||||| || Sbjct 63382 AGCGTTTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGCTTCTACGGTTTCCAAATTA 63323 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-C 1456068 || || || || |||||||| |||||||| ||||| ||||||||||| ||||||| | Sbjct 63322 TGATGGAGAATATTCACTCTGAGACCTACTCACTCCTCATCGACACCTATATCAAGGATC 63263 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGC-GCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | | | | | |||| ||||| ||||| || || | || | || | | || Sbjct 63262 CCAGACAACGCGAAT-ACCT-TTTCGATGCCATGGAGACCATTCCCTGCGTTAAGCGCAA 63205 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 |||||||||||| |||||||||| | | | | || || |||||| || || | Sbjct 63204 GGCCGACTGGGCACTGAAGTGGATAACTGATCAACGT-TCCAC-CTTTGCTGAACGATTG 63147 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTG 1456245 || | || || || |||||||| ||||| ||||| ||| || ||| ||||||| || Sbjct 63146 GTAGCATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTT-TGCATCCATCTTCTG 63088 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| ||||| |||||||| ||||| Sbjct 63087 GCTCAAGAAACGCGGTCTCATGCCTGGTCT 63058 Score = 131 bits (144), Expect = 2e-24 Identities = 367/547 (67%), Gaps = 25/547 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| |||||| ||||||| || |||||||||||||| || | || | Sbjct 64717 GATTTGGAACATGTACAAAAAAG-CCGAGGCTTCTTTTTGGACCGCCGAAGAAATGGATC 64775 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC--GCTGAGCGACGAC-GAGCGCCATTTCATCA 1455891 || | | |||| || ||||| | || | | | | || || ||||||||| Sbjct 64776 TCTCCACTGACATTATCGACTGGAATACCCGCCTAACTTCAAATGAACGTCATTTCATCT 64835 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || || | || ||| ||||| || ||| ||||| || ||||| |||| | Sbjct 64836 CACATGTTTTAGC-TTTCTTCGCTGCATCCGACGGCATAGTCAATGAGAATCTGGTTGAG 64894 Query 1455952 CGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || ||| ||| ||||| || ||||| ||| || || | |||||||||||||| ||| Sbjct 64895 CGGTTTTCGAACGAGGTTCAGATTGC-AGAAGCTCGATGCTTTTACGGGTTCCAAATCAT 64953 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||||| |||||||| || || ||||| || ||||| ||||||||| | ||||||| Sbjct 64954 GATCGAGAACATCCATTCCGAGACCTATTCACTCCTTATCGACACCCTCATCAAGGA--- 65010 Query 1456071 GGTCGAGAAGGACCACCT--CTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 ||| | || || | ||||| || || || | | || | || | | || Sbjct 65011 TGTCAATGAGCGGCAGTTTCTTTTCGATGCAATAGAGTCCATACCCGCCGTTAAGCGCAA 65070 Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 ||| ||||||||| | ||||| |||| | | | ||| || || || Sbjct 65071 GGCAGACTGGGCGTTACGATGGATATCTGACAAACATG----CCACA-TTCGCTACCCGA 65125 Query 1456185 CTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 || || | ||||| || || ||||||||||| || || || |||| | || || Sbjct 65126 CTAGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTC 65185 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAATTTATCAGTC 1456302 |||||||| ||||| || | ||||| || || ||||| | |||||| | ||||||| Sbjct 65186 TGGCTCAAAAAGCGTGGATTGATGCCAGGCCT--CGCTTTCTCAAACGAACTCATCAGTC 65243 Query 1456303 GCGACGA 1456309 | ||||| Sbjct 65244 GTGACGA 65250 Score = 91.5 bits (100), Expect = 2e-12 Identities = 118/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||||| ||||||||||||| ||||||| |||||||||| | | |||||||| |||||| Sbjct 62838 CTCATTGGCATGAACGCCA-AGCTCATGCGCCAGTACATCG-AGTTTGTCGCAGACCGCT 62781 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | | |||| || | |||||| ||| | |||| || ||| | ||| Sbjct 62780 TACTAGTGTCGCT-GGGTAACGAGAAGGTGTACAACTCTACCAATCCCTTCGACTTCATG 62722 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || |||||||||| | |||||||| ||||| |||||| Sbjct 62721 GACATGATCTCGCTACAAGGCAAGACGAACTTCTTCGAG 62683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177170470440166