Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2220 163 4e-35 seq4642 102 1e-16 >seq2220 Length=173857 Score = 163 bits (180), Expect = 4e-35 Identities = 362/539 (67%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 ||||| || | ||| || | |||||| || || | ||| || ||||| | ||||||||| Sbjct 65253 CCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTT 65194 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||||||| ||||| | || ||||| || |||||||||||||| || || || ||||| Sbjct 65193 TTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAA 65134 Query 39758 GCAACAAGTCTCTCTCCGTAACTTGTATCATTATG---TATCCACTTCTGT---GCCCAA 39811 ||||| |||| || | | | || || | |||||| || || ||||| Sbjct 65133 GCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCA--TC-GTAACGCCCAG 65077 Query 39812 TCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCA 39871 || || || ||| || || || | ||||| |||| || ||| | || ||| Sbjct 65076 TCTGCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCGCTCA 65017 Query 39872 TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCA 39931 | ||| || | || || || | || ||| | || ||||||||||| || Sbjct 65016 TTGACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCG 64957 Query 39932 ATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAAT 39991 ||| || || || |||||||| |||| ||||| | ||| || ||||| |||| Sbjct 64956 ATCATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAAC 64897 Query 39992 CTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGT 40051 | || ||| ||| ||||| ||||| || || || || || || || || |||||| Sbjct 64896 CGCTCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGT 64837 Query 40052 TTAATAAAATATTTTTCATCGGGTGTCAATT---TATTCCAGTCATTGATATCTTTTGAT 40108 || |||| ||||| | || | |||||||||| | || || | || Sbjct 64836 GAGATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGTGGAG 64777 Query 40109 ATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 | ||| | |||||| || |||||||| || ||||| || ||||||||||||||||| || Sbjct 64776 AGATCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 >seq4642 Length=14046 Score = 102 bits (112), Expect = 1e-16 Identities = 181/259 (70%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || ||||| ||||| | || ||| | ||||||| || | ||||||||| |||||| Sbjct 10197 CCAATTCCACCTGCGGTCTTGCTGATCATGGCACAACTCTTGAGTGTGTCATAGATACCC 10256 Query 69934 TCTATGCTATCATCTATCATGTTAAG-AAGAA--AACAGCTAGACATTTGATGATGTATA 69990 |||||| |||||| |||| || ||||| | |||| | ||| |||| | Sbjct 10257 TCTATGGAGTCATCTTTCATACAAACCAAGAAGCATGAGCTT---AGTTGCGGATGAGGA 10313 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || |||||||||| || || || ||||| ||||| | |||||| | || ||| Sbjct 10314 GTGCCAGCATTAAATAGAGTTGGCGACGCGTGCGTGAAGTAACGTTCAGACATAAGGTTG 10373 Query 70051 TATGTTTCAATA--GCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 || || ||||| |||| || |||||| || || || || | ||||||||||| | Sbjct 10374 TACGTCTCAATGACGCTG--TCGATATCCTGCTTGTGGATGCCCACTGCGACACGCATGA 10431 Query 70109 ACATATGCTGAGGTCGTTC 70127 ||| || ||||| ||||| Sbjct 10432 TCATGTGTTGAGGACGTTC 10450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686851760810520