Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2220 170 2e-37 >seq2220 Length=173857 Score = 170 bits (188), Expect = 2e-37 Identities = 389/578 (67%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| | |||||||||||||| |||| || |||||||| || |||||| | ||| | Sbjct 64718 ATTTGGAACATGTACAAAAAAGCCGAGGCTTCTTTTTGGACCGCCGAAGAAATGGATCTC 64777 Query 43790 ACTAAAGAC-TTAGCACATTGGATTGCAT---TAAAACCACAAGAAAAACATTTTATATC 43845 | | ||| ||| | | |||| | | ||| || | ||| ||||| || || Sbjct 64778 TCCACTGACATTATCG-ACTGGAATACCCGCCTAACTTCAAATGAACGTCATTTCATCTC 64836 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 ||||| || || || ||||| |||||| ||||||||||| ||| ||||| || Sbjct 64837 ACATGTTTTAGCTTTCTTCGCTGCATCCGACGGCATAGTCAATGAGAATCTGGTTGAGCG 64896 Query 43906 GTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCAT 43965 |||| || | || ||||| | ||||||| ||||| ||||| ||||| ||||| || Sbjct 64897 GTTTTCGAACGAGGTTCAGATTGCAGAAGCTCGATGCTTTTACGGGTTCCAAATCATGAT 64956 Query 43966 AGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA 44025 || || || ||||| || | || || || || || || |||||| |||| | Sbjct 64957 CGAGAACATCCATTCCGAGACCTATTCACTCCTTATCGACACCCTCATCAAGGATGTCAA 65016 Query 44026 CGAGAAGCATCGATTGTTT--AATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCA 44083 ||| ||| | || ||| |||| ||||| | |||| || |||| | || ||| Sbjct 65017 TGAGCGGCA--GTTTCTTTTCGATGCAATAGAGTCCATACCCGCCGTTAAGCGCAAGGCA 65074 Query 44084 GACTGGGCCCTTAAATGGATAAAT-TCAA--ATGATTCTTTTGGAGAACGACTTGTCGCG 44140 |||||||| | ||||||| | ||| ||| | || | ||||| || || Sbjct 65075 GACTGGGCGTTACGATGGATATCTGACAAACATGCCACATTCGCTACCCGACTAGTTGCT 65134 Query 44141 TTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAG 44200 ||||| | ||| || ||||| |||||||| || || || || | ||||| ||| | || Sbjct 65135 TTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGGCTCAAA 65194 Query 44201 AAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGC 44260 || || || |||||||| || | | || ||||| || | || |||||||| || || Sbjct 65195 AAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGACGAGGGG 65254 Query 44261 TTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT 44298 | || || |||||||| | ||| || | |||| Sbjct 65255 ATGCACACAGACTTTGCTTGTCTTTTATTTAGCCATCT 65292 Score = 131 bits (144), Expect = 1e-25 Identities = 375/565 (66%), Gaps = 14/565 (2%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 ||||||||||||||||| || || |||| || || ||||| || || || | ||| | Sbjct 63557 ATATGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACTGCTGAGGAGATGGATCTC 63498 Query 43790 ACTAAAGACTTAGCACATTGGATTG--CATTAAAACCACAA-GAAAAACATTTTATATCT 43846 | |||||| | | |||| | | || |||| || || || ||||| Sbjct 63497 TCAAAAGACGTTCATGACTGGACCAACCGTCTCAATGACAACGAGCGCCACTTCATATCA 63438 Query 43847 TTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGG 43906 || | || || || ||||| ||| || || ||||||||||| | ||| || Sbjct 63437 CATGTACTCGCCTTCTTCGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTGAGCGT 63378 Query 43907 TTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATA 43966 || | | || ||||| | ||||| || || || || || || |||||| || Sbjct 63377 TTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGCTTCTACGGTTTCCAAATTATGATG 63318 Query 43967 GAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCAC 44026 || |||||||| || || | ||| || || || || || || ||||| ||| || Sbjct 63317 GAGAATATTCACTCTGAGACCTACTCACTCCTCATCGACACCTATATCAAGGATCC-CA- 63260 Query 44027 GAGAA---GCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATAAAGC 44082 || || | || || || |||| || || || | | |||||| |||| | || || Sbjct 63259 GACAACGCGAATACCTT-TTCGATGCCATGGAGACCATTCCCTGCG-TTAAGCGCAAGGC 63202 Query 44083 AGACTGGGCCCTTAAATGGATAAAT--TCAAA-TGATTCTTTTGGAGAACGACTTGTCGC 44139 |||||||| || || ||||||| | |||| | | |||| |||||| | || || Sbjct 63201 CGACTGGGCACTGAAGTGGATAACTGATCAACGTTCCACCTTTGCTGAACGATTGGTAGC 63142 Query 44140 GTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAA 44199 || || | || || || || ||||| || || || ||||| |||| || ||| | || Sbjct 63141 ATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCTGGCTCAA 63082 Query 44200 GAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 |||||| ||| | |||||||| | || || || || ||| | || || |||||||| || Sbjct 63081 GAAACGCGGTCTCATGCCTGGTCTCACTTTCTCCAACGAGCTCATCAGCCGTGATGAGGG 63022 Query 44260 CTTACATTGCGATTTTGCTTGCTTG 44284 | || ||| |||||||||||| Sbjct 63021 TATGCACACCGACTTTGCTTGCTTG 62997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397423821341215