Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2220 132 6e-26 seq4642 109 6e-19 >seq2220 Length=173857 Score = 132 bits (146), Expect = 6e-26 Identities = 352/526 (67%), Gaps = 19/526 (4%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGAC---TCTAAAT 94497 ||||||||||| ||| | ||||||||||| || | | || |||| | ||| ||| Sbjct 63521 TGGACTGCTGAGGAGATGGATCTCTCAAAAGACGTTCATGACTGGACCAACCGTCTCAAT 63462 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || || || | |||||| | | | || || ||||| |||| ||||||||| || Sbjct 63461 GACAACGAGCGCCACTTCATATCACATGTACTCGCCTTCTTCGCTGCATCCGATGGCATC 63402 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCC 94617 || ||| || || | | || | ||||||| || || | ||||| | | | Sbjct 63401 GTCAATGAAAACCTCGTTGAGCGTTTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGC 63342 Query 94618 TTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCAT 94676 ||||| | || || | || ||| | | | || ||||| ||| ||||| Sbjct 63341 TTCTACG-GTTTCCAAATTATGATGGAGAATATTCACTCTGAGACCTACTCACTCCTCAT 63283 Query 94677 AGACAAGTATATTAAGGATGGTGCTGAGAA---GAAGCAGCTCTTTGAAGCCATCCAAAC 94733 |||| ||||| |||||| | || || ||| | || || || ||||| | || Sbjct 63282 CGACACCTATATCAAGGATCC--CAGACAACGCGAAT-ACCTTTTCGATGCCATGGAGAC 63226 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAGTC 94790 |||| || || | || || || ||||| |||||||| | |||| ||| || Sbjct 63225 CATTCCCTGCGTTAAGCGCAAGGCCGACTGGGCACTGAAGTGGATAACTGAT-CAACGTT 63167 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | |||||||||| ||| | | ||||| || || |||||||||||||||||||| Sbjct 63166 CCA--CCTTTGCTGAACGATTGGTAGCATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGG 63109 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 ||||| ||| | || | ||||||||||| || ||||||||||| |||||| |||| Sbjct 63108 CTCCTT-TGCATCCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCTGGTCTCACTTTCT 63050 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||||| ||| ||||| ||||| | ||| || ||||| Sbjct 63049 CCAACGAGCTCATCAGCCGTGATGAGGGTATGCACACCGACTTTGC 63004 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 ||||| | || ||||| ||||||||| |||||||| || ||||| ||| |||| Sbjct 65123 CGACTAGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATA 65182 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||||| ||||| || | |||||||| ||| ||||| ||||| || ||| | Sbjct 65183 TTCTGGCTCAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGT 65242 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| | ||| ||| ||||| Sbjct 65243 CGTGACGAGGGGATGCACACAGACTTTGC 65271 >seq4642 Length=14046 Score = 109 bits (120), Expect = 6e-19 Identities = 218/319 (68%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 |||||| || || ||||| ||||| || || |||| ||||||| || | |||| Sbjct 9471 AGATGAAACCGCGGTGTGCAACCTTGCCTCCCTCGCCCTCCCCACTTACATC--TCCAAC 9414 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | ||| | ||||| |||| || ||||| ||||| || |||||| ||||| Sbjct 9413 GGCAAGTA----TGATTTCCAAAAGCTTCACGATGTTACAAAGGTCGTCACCCGCAACCT 9358 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGA 105212 |||| | | || ||| || | ||||||| | ||| |||| ||||| || | | Sbjct 9357 AAACCGCATCATCGATGTCAACTATTACCCCATCCCAGAG-GCTCACAAATCCAACACGC 9299 Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCC 105272 ||||||| || |||||||| ||||| |||||||| || |||| || || || |||| Sbjct 9298 GACACCGCCCCATTGGTCTTGGTGTACAGGGTCTTGCTGATGCTTTTATGATTCTCCGCC 9239 Query 105273 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332 |||| || || | || |||| | | ||||| | || ||||||||||| || | Sbjct 9238 TGCCATTCGACTCAGCGGAGGCGAGGCAGCTCAATCTCCAGATTTTTGAGACCATCTACC 9179 Query 105333 ACGCCGCTCTTGAGGCGAG 105351 | |||| || ||||| || Sbjct 9178 ATGCCGGACTCGAGGCCAG 9160 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/233 (69%), Gaps = 11/233 (5%) Strand=Plus/Minus Query 104497 TAAATCTCGTAT-TCGGGGGA-CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554 |||| |||||| ||| ||| ||||||| | ||| | |||||| |||| ||||| || Sbjct 10118 TAAAGATCGTATATCGCTGGAACAAATGGCTACTCAAACGGTATTGTTCCTATGCTCCGT 10059 Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCT 104608 | || | ||||||| || || ||||| |||||| ||| ||||| |||| | Sbjct 10058 GCATATGACGCCACCGCACGTTATGTCGATCAAGGTGGCAACAAGCGTCC---GGGAGCC 10002 Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668 |||| | || ||||||||||||||| | ||| | | || ||||| || || | Sbjct 10001 TTCGCTATTTACCTTGAGCCATGGCACCCTGATGTATTTGATTTCCTGGACTTAAGGAAG 9942 Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGAT 104721 ||||| ||| | |||||| | || ||| || | |||| ||| | ||||| Sbjct 9941 AACCACGGTAAAGAGGAGTCACGCGCCCGTGACTTGTTCTACGCATTGTGGAT 9889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583212367481320