Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2220 132 6e-26
seq4642 109 6e-19
>seq2220
Length=173857
Score = 132 bits (146), Expect = 6e-26
Identities = 352/526 (67%), Gaps = 19/526 (4%)
Strand=Plus/Minus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGAC---TCTAAAT 94497
||||||||||| ||| | ||||||||||| || | | || |||| | ||| |||
Sbjct 63521 TGGACTGCTGAGGAGATGGATCTCTCAAAAGACGTTCATGACTGGACCAACCGTCTCAAT 63462
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
|| || || | |||||| | | | || || ||||| |||| ||||||||| ||
Sbjct 63461 GACAACGAGCGCCACTTCATATCACATGTACTCGCCTTCTTCGCTGCATCCGATGGCATC 63402
Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCC 94617
|| ||| || || | | || | ||||||| || || | ||||| | | |
Sbjct 63401 GTCAATGAAAACCTCGTTGAGCGTTTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGC 63342
Query 94618 TTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCAT 94676
||||| | || || | || ||| | | | || ||||| ||| |||||
Sbjct 63341 TTCTACG-GTTTCCAAATTATGATGGAGAATATTCACTCTGAGACCTACTCACTCCTCAT 63283
Query 94677 AGACAAGTATATTAAGGATGGTGCTGAGAA---GAAGCAGCTCTTTGAAGCCATCCAAAC 94733
|||| ||||| |||||| | || || ||| | || || || ||||| | ||
Sbjct 63282 CGACACCTATATCAAGGATCC--CAGACAACGCGAAT-ACCTTTTCGATGCCATGGAGAC 63226
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAGTC 94790
|||| || || | || || || ||||| |||||||| | |||| ||| ||
Sbjct 63225 CATTCCCTGCGTTAAGCGCAAGGCCGACTGGGCACTGAAGTGGATAACTGAT-CAACGTT 63167
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
| |||||||||| ||| | | ||||| || || ||||||||||||||||||||
Sbjct 63166 CCA--CCTTTGCTGAACGATTGGTAGCATTCGCTGCCGTCGAGGGTATCTTCTTCTCTGG 63109
Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909
||||| ||| | || | ||||||||||| || ||||||||||| |||||| ||||
Sbjct 63108 CTCCTT-TGCATCCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCTGGTCTCACTTTCT 63050
Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||||| ||| ||||| ||||| | ||| || |||||
Sbjct 63049 CCAACGAGCTCATCAGCCGTGATGAGGGTATGCACACCGACTTTGC 63004
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866
||||| | || ||||| ||||||||| |||||||| || ||||| ||| ||||
Sbjct 65123 CGACTAGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATA 65182
Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926
| |||||||| ||||| || | |||||||| ||| ||||| ||||| || ||| |
Sbjct 65183 TTCTGGCTCAAAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGT 65242
Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||| | ||| ||| |||||
Sbjct 65243 CGTGACGAGGGGATGCACACAGACTTTGC 65271
>seq4642
Length=14046
Score = 109 bits (120), Expect = 6e-19
Identities = 218/319 (68%), Gaps = 8/319 (3%)
Strand=Plus/Minus
Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093
|||||| || || ||||| ||||| || || |||| ||||||| || | ||||
Sbjct 9471 AGATGAAACCGCGGTGTGCAACCTTGCCTCCCTCGCCCTCCCCACTTACATC--TCCAAC 9414
Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153
| ||| | ||||| |||| || ||||| ||||| || |||||| |||||
Sbjct 9413 GGCAAGTA----TGATTTCCAAAAGCTTCACGATGTTACAAAGGTCGTCACCCGCAACCT 9358
Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGA 105212
|||| | | || ||| || | ||||||| | ||| |||| ||||| || | |
Sbjct 9357 AAACCGCATCATCGATGTCAACTATTACCCCATCCCAGAG-GCTCACAAATCCAACACGC 9299
Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCC 105272
||||||| || |||||||| ||||| |||||||| || |||| || || || ||||
Sbjct 9298 GACACCGCCCCATTGGTCTTGGTGTACAGGGTCTTGCTGATGCTTTTATGATTCTCCGCC 9239
Query 105273 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332
|||| || || | || |||| | | ||||| | || ||||||||||| || |
Sbjct 9238 TGCCATTCGACTCAGCGGAGGCGAGGCAGCTCAATCTCCAGATTTTTGAGACCATCTACC 9179
Query 105333 ACGCCGCTCTTGAGGCGAG 105351
| |||| || ||||| ||
Sbjct 9178 ATGCCGGACTCGAGGCCAG 9160
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/233 (69%), Gaps = 11/233 (5%)
Strand=Plus/Minus
Query 104497 TAAATCTCGTAT-TCGGGGGA-CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554
|||| |||||| ||| ||| ||||||| | ||| | |||||| |||| ||||| ||
Sbjct 10118 TAAAGATCGTATATCGCTGGAACAAATGGCTACTCAAACGGTATTGTTCCTATGCTCCGT 10059
Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCT 104608
| || | ||||||| || || ||||| |||||| ||| ||||| |||| |
Sbjct 10058 GCATATGACGCCACCGCACGTTATGTCGATCAAGGTGGCAACAAGCGTCC---GGGAGCC 10002
Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668
|||| | || ||||||||||||||| | ||| | | || ||||| || || |
Sbjct 10001 TTCGCTATTTACCTTGAGCCATGGCACCCTGATGTATTTGATTTCCTGGACTTAAGGAAG 9942
Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGAT 104721
||||| ||| | |||||| | || ||| || | |||| ||| | |||||
Sbjct 9941 AACCACGGTAAAGAGGAGTCACGCGCCCGTGACTTGTTCTACGCATTGTGGAT 9889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583212367481320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |