Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 150 5e-31
seq1236 105 2e-17
seq4824 104 7e-17
seq6280 87.8 5e-12
seq790 86.0 2e-11
>seq4212
Length=20478
Score = 150 bits (166), Expect = 5e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||| ||||| | | ||||| || ||||| ||||||||||| || || ||||||||
Sbjct 1915 CATACCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATC 1856
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || ||||| ||||| || || || || |||||
Sbjct 1855 GGACAGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGG 1796
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || || |||||||| || || | ||||| | ||
Sbjct 1795 AGGAATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTC 1736
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | || || || || || || || ||||| ||||||||
Sbjct 1735 CACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1685
Score = 127 bits (140), Expect = 6e-24
Identities = 168/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
|||| |||||||| | | || ||||| || || || ||| || || ||||| ||
Sbjct 2373 TACAGCCCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAG 2314
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | || || ||||| ||||| || ||||| |||||||| ||||| ||||||||
Sbjct 2313 TCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCC 2254
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || || || || || |||||||| || || || ||||| || || | || ||||
Sbjct 2253 GGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGAC 2194
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | |||| || || || || || || || || |||||||||||
Sbjct 2193 TCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141
>seq1236
Length=761
Score = 105 bits (116), Expect = 2e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
|||||||| | || |||||||||||||| || ||||| || || |||||||| || ||
Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|||||||| || || || || ||||| || || | || |||| || || || | ||
Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || || ||||| ||||| ||||||||
Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160
>seq4824
Length=32535
Score = 104 bits (114), Expect = 7e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct 157 CCACCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAG 98
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| || || |||||||| | || || || || ||||| || || || |||||||||||
Sbjct 97 AGCGTACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGG 38
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665
|| ||||| || |||||||| || || || || ||
Sbjct 37 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 3
>seq6280
Length=76176
Score = 87.8 bits (96), Expect = 5e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
||||||| || ||||||||||||||||| |||||||| || || ||||| || ||||
Sbjct 43301 ATGCTGTCATCACTGTACCAGCCTATTTCAATGATGCACAACGGCAAGCAACGAAGGATG 43360
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
| || |||||||| | | ||||| | |||| || ||||| || ||||| ||
Sbjct 43361 CCGGTCAAATTGCGGGTCTCGAAGTTCTTCGGGTGATCAACGAACCTACGGCTGCTGCTC 43420
Query 349728 TTGCATATGGGCTTGA 349743
|||| ||||| || ||
Sbjct 43421 TTGCCTATGGTCTGGA 43436
>seq790
Length=59236
Score = 86.0 bits (94), Expect = 2e-11
Identities = 92/121 (76%), Gaps = 3/121 (2%)
Strand=Plus/Minus
Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254
||||||||||| || ||||||||||| ||||| || | || |||| || |||
Sbjct 25185 GTTGGTGGTTCGACCCGTATTCCAAAGGTTCAGCAACTTCTGAAGGAGTACTTC---GGC 25129
Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314
|||||||| || | || || || |||||||||||||| |||||||| |||||||||
Sbjct 25128 AAAGAACCGTCGAAGGGTATCAACCCCGATGAAGCTGTTGCTTATGGTGCCGCTGTTCAG 25069
Query 350315 G 350315
|
Sbjct 25068 G 25068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515125431489329
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |