Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4212 150 5e-31 seq1236 105 2e-17 seq4824 104 7e-17 seq6280 87.8 5e-12 seq790 86.0 2e-11 >seq4212 Length=20478 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | ||||| || ||||| ||||||||||| || || |||||||| Sbjct 1915 CATACCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATC 1856 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || ||||| ||||| || || || || ||||| Sbjct 1855 GGACAGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGG 1796 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || |||||||| || || | ||||| | || Sbjct 1795 AGGAATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTC 1736 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | || || || || || || || ||||| |||||||| Sbjct 1735 CACCTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1685 Score = 127 bits (140), Expect = 6e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 |||| |||||||| | | || ||||| || || || ||| || || ||||| || Sbjct 2373 TACAGCCCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAG 2314 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | || || ||||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 2313 TCTGACAGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCC 2254 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || || || || || || |||||||| || || || ||||| || || | || |||| Sbjct 2253 GGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGAC 2194 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||| || || || || || || || || ||||||||||| Sbjct 2193 TCCACCTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141 >seq1236 Length=761 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 |||||||| | || |||||||||||||| || ||||| || || |||||||| || || Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 |||||||| || || || || ||||| || || | || |||| || || || | || Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||| ||||| |||||||| Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160 >seq4824 Length=32535 Score = 104 bits (114), Expect = 7e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || ||||| || ||||| || ||||| |||||||| || Sbjct 157 CCACCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAG 98 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| | || || || || ||||| || || || ||||||||||| Sbjct 97 AGCGTACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGG 38 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 || ||||| || |||||||| || || || || || Sbjct 37 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 3 >seq6280 Length=76176 Score = 87.8 bits (96), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| || ||||||||||||||||| |||||||| || || ||||| || |||| Sbjct 43301 ATGCTGTCATCACTGTACCAGCCTATTTCAATGATGCACAACGGCAAGCAACGAAGGATG 43360 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || |||||||| | | ||||| | |||| || ||||| || ||||| || Sbjct 43361 CCGGTCAAATTGCGGGTCTCGAAGTTCTTCGGGTGATCAACGAACCTACGGCTGCTGCTC 43420 Query 349728 TTGCATATGGGCTTGA 349743 |||| ||||| || || Sbjct 43421 TTGCCTATGGTCTGGA 43436 >seq790 Length=59236 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254 ||||||||||| || ||||||||||| ||||| || | || |||| || ||| Sbjct 25185 GTTGGTGGTTCGACCCGTATTCCAAAGGTTCAGCAACTTCTGAAGGAGTACTTC---GGC 25129 Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314 |||||||| || | || || || |||||||||||||| |||||||| ||||||||| Sbjct 25128 AAAGAACCGTCGAAGGGTATCAACCCCGATGAAGCTGTTGCTTATGGTGCCGCTGTTCAG 25069 Query 350315 G 350315 | Sbjct 25068 G 25068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515125431489329