Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4642 147 2e-30 seq2220 147 2e-30 >seq4642 Length=14046 Score = 147 bits (162), Expect = 2e-30 Identities = 236/338 (70%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 78820 TTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCC 78879 ||||||| | ||||| | |||||| | |||| ||| ||||| || |||| || Sbjct 9205 TTGAGCTGCCTCGCCTCCGCTGAGTCGAATGGCAGGCGGAGAATCATAAAAGCATCAGCA 9264 Query 78880 AGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCG 78939 || ||||| || || | | | || || ||||| ||| ||||| || | ||| | | Sbjct 9265 AGACCCTGTACACCAAGACCAATGGGGCGGTGTCGCGTGTTGGATTTGTGAGCCTCTGGG 9324 Query 78940 GTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACC 78999 | |||||| |||| |||||||| |||||| ||||| || ||||||||| || || Sbjct 9325 ATGGGGTAATAGTTGACATCGATGATGCGGTTTAGGTTGCGGGTGACGACCTTTGTAACA 9384 Query 79000 TCGTACAATTTGGCGAAATCAAAATGATTTCCTTTG---ATGAAAGTCGGTAGGCACAGC 79056 |||| | || ||||||| | | | || ||| ||| |||| || ||| || Sbjct 9385 TCGTGAAGCTTTTGGAAATCATACT---TGCCGTTGGAGATGTAAGTGGGGAGGGCGAGG 9441 Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || || ||||||||||| || || || || || || || ||| ||||| |||||| Sbjct 9442 GAGGCAAGGTTGCACACCGCGGTTTCATCTGGAGACGAGTACTGGATTATTTCAGTGCAC 9501 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 || || |||||||||||||| || | |||||| ||||| Sbjct 9502 AAGTTCGACGACTTGATGGTTCCCAAGTTCTTTTGGTT 9539 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || || ||||||||||||||||| ||||| || ||||||||||||||||| | |||||| Sbjct 8513 CGGGTGCGCAAATAGTACATGCCAGTCTTAAGGCCCTTCTTCCATCCGTAGAAGTGCATG 8572 Query 78247 CTCGACAGCTTGGCCAGAC--TCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 |||| || || ||| || | || || || |||||| || ||| ||| Sbjct 8573 CTCGTCAACT--GCCCAACGGTAGGAGACTGCAGATGGATGTTCAGACTCTGACTCTGAC 8630 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364 ||| | || || |||||||| || | |||||||||| ||| |||| |||||||| | Sbjct 8631 AAATGAAGGCTCCACGGTCGGCAGCAAGGTCGATGACCTTCTTCTGCGAGATCTCCCATA 8690 Query 78365 TGGTCCGGTAAATGGCCTT 78383 ||| ||||||||| || Sbjct 8691 CAGTCTTGTAAATGGCTTT 8709 >seq2220 Length=173857 Score = 147 bits (162), Expect = 2e-30 Identities = 346/512 (68%), Gaps = 18/512 (4%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC-- 59670 || |||||| | | |||||||| || ||| | |||| | | || ||| ||| | Sbjct 63527 TCCTTCTGGACTGCTGAGGAGATGGATCTCTCAAAAGACGTTCATGACTGGACCAACCGT 63468 Query 59671 -TCAATTACGACGAGCAGCATTTCATCA-AGATGGTCCTGGCCTTCTTCGCGGCGAGTGA 59728 ||||| || |||||| || ||||| | ||| | || ||||||||||| || || Sbjct 63467 CTCAATGACAACGAGCGCCACTTCATATCACATG-TACTCGCCTTCTTCGCTGCATCCGA 63409 Query 59729 TGGAATTGTGATGGAAAATATAGACATGAACTTTTC--CAAGGATGTCCAGATTGCCGAG 59786 ||| || || | ||||| | | ||| | |||| ||| || || ||| ||||| Sbjct 63408 TGGCATCGTCAATGAAAACCTCGT--TGAGCGTTTCTCCAATGAGGTTCAGGCCGCCGAA 63351 Query 59787 GCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCG 59846 ||||||| ||||||| | || | | ||| ||| ||||| ||||| ||||| Sbjct 63350 GCCCGGTGCTTCTACGGTTTCCAAATTATGATGGAGAATATTCACTCTGAGACCTACTCA 63291 Query 59847 CTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT--CTGTTCCGTGCCA 59904 ||| | ||||| | | |||||||||| ||| || || | || ||| ||||| Sbjct 63290 CTCCTCATCGACACCTATATCAAGGATCCC--AGACAACGCGAATACCTTTTCGATGCCA 63233 Query 59905 TAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCT 59963 | ||||| | ||| || ||||| | || || || ||||| || ||||||| | | | Sbjct 63232 TGGAGACCATTCCCTGC-GTTAAGCGCAAGGCCGACTGGGCACTGAAGTGGATAACTGAT 63174 Query 59964 GGAGCATCA---TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTC 60020 | || ||||| |||| | |||| || || ||| || || ||||||||| Sbjct 63173 CAACGTTCCACCTTTGCTGAACGATTGGTAGCATTCGCTGCCGTCGAGGGTATCTTCTTC 63114 Query 60021 TCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGT 60080 |||||||| || | || ||||||||||| || || || |||||||| || || | | Sbjct 63113 TCTGGCTCCTTTGCATCCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCTGGTCTCACT 63054 Query 60081 TTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 |||||||||||||| || ||| || ||||| Sbjct 63053 TTCTCCAACGAGCTCATCAGCCGTGATGAGGG 63022 Score = 104 bits (114), Expect = 3e-17 Identities = 244/361 (68%), Gaps = 13/361 (4%) Strand=Plus/Plus Query 59760 TTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAAC 59819 ||||| || || || |||||||| || || || | || |||| || || | | | Sbjct 64898 TTTTCGAACGAGGTTCAGATTGCAGAAGCTCGATGCTTTTACGGGTTCCAAATCATGATC 64957 Query 59820 GAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAA 59879 ||| ||||| |||||||| || || ||| | ||||| | | |||||||| | Sbjct 64958 GAGAACATCCATTCCGAGACCTATTCACTCCTTATCGACACCCTCATCAAGGATGTCAAT 65017 Query 59880 GAGAAGGCTGGT-CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGA 59938 ||| ||| | | || ||| ||| |||||| | ||||| ||||| | || ||||| Sbjct 65018 GAGC-GGCAGTTTCTTTTCGATGCAATAGAGTCCATACCCGCCGTTAAGCGCAAGGCAGA 65076 Query 59939 ATGGGCCATGCAGTGGATGAGTCCTGG--AGCAT----CATTTGCACAACGTCTCATAGC 59992 ||||| | | ||||| ||| | ||| |||| || || || | || Sbjct 65077 CTGGGCGTTACGATGGATAT---CTGACAAACATGCCACATTCGCTACCCGACTAGTTGC 65133 Query 59993 TTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCA 60051 |||||| ||| || || || |||||||| || || || ||| |||| |||||||||| Sbjct 65134 TTTTGC-TGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGGCTCA 65192 Query 60052 AAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||||||| | ||||| ||||| |||||| ||||| || || || ||||||| Sbjct 65193 AAAAGCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGACGAGG 65252 Query 60112 G 60112 | Sbjct 65253 G 65253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548479251871920