Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2220 127 2e-24 seq2361 104 3e-17 seq4763 100 3e-16 seq5382 93.3 5e-14 seq4642 89.7 6e-13 >seq2220 Length=173857 Score = 127 bits (140), Expect = 2e-24 Identities = 340/509 (67%), Gaps = 18/509 (4%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | ||| || | || || || || | || |||||||| || || || ||| Sbjct 63022 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACCGCGTTTC 63081 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||||| ||||| ||| ||||||||| || ||||| || || Sbjct 63082 TTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAT 63141 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG--GA--AGTCATCCAAGTCTGAGCCCATTC 74944 || || | |||| || || |||| | || || ||| ||||| || | ||||| || Sbjct 63142 GCTACCAATCGTTCAGCAAA-GGTGGAACGTTGATCAGTTATCCACTTCAGTGCCCAGTC 63200 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAAGAGGCTT--GCCTTCTC 75001 || || || || || ||||||| | | || || || | ||| ||| | || || || Sbjct 63201 GGCCTTGCGCTTAAC-GCAGGGAATGGTCTCCATGGCATCGAAAAGGTATTCGCGTTGTC 63259 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 | ||||||||||| |||| || | |||||||| ||||| || ||||| ||| Sbjct 63260 T--GGGATCCTTGATATAGGTGTCGATGAGGAGTGAGTAGGTCTCAGAGTGAATATTCTC 63317 Query 75062 GTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA 75121 | | ||| | ||||||| |||| || || || ||| || || || || || Sbjct 63318 CATCATAATTTGGAAACCGTAGAAGCACCGGGCTTCGGCGGCCTGAACCTCATTGGAGAA 63377 Query 75122 ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCAT 75181 | | ||| || || |||||||||| || || || ||||| || || ||||| Sbjct 63378 ACGCTCAACGAGGTTTTCATTGACGATGCCATCGGATGCAGCGAAGAAGGCGAGTACA-- 63435 Query 75182 TTTGATA--AAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCC 75236 | ||||| ||||||||||| | |||| ||| | ||| ||| || | | ||| Sbjct 63436 TGTGATATGAAGTGGCGCTCGTTGTCATTGAGACGGTTGGTCCAGTCATGAACGTCTTTT 63495 Query 75237 GCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | | ||| |||||||| | |||||||| Sbjct 63496 GAGAGATCCATCTCCTCAGCAGTCCAGAA 63524 Score = 100 bits (110), Expect = 3e-16 Identities = 264/398 (66%), Gaps = 9/398 (2%) Strand=Plus/Minus Query 74781 CTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAG 74840 || || | ||| || || || | ||||| ||||| | ||||||||| || | ||| || Sbjct 65241 CTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAAT 65182 Query 74841 ATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900 || | ||| ||||| ||||||||||| || ||| ||||| || || || || Sbjct 65181 ATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAAGCAACTAGTCGG 65122 Query 74901 TGCGCGAACGGTGCATC---GGAAGTCATCCAAGTCTGA--GCCCATTCAGCTTTTCGTT 74955 ||||| | |||| | || ||||| || | ||||| || || || || | Sbjct 65121 GTAGCGAATGTGGCATGTTTGTCAGATATCCA--TCGTAACGCCCAGTCTGCCTTGCGCT 65064 Query 74956 TGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT-TGCCTTCTCTTCGGGATCCTTG 75014 | || || || | | || || || | ||| || |||| ||| | | ||||||| Sbjct 65063 TAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCG-CTCATTGACATCCTTG 65005 Query 75015 ACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGG 75074 | ||| |||| || | ||||| || ||||| ||||| || |||| | | ||| Sbjct 65004 ATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGG 64945 Query 75075 TACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATA 75134 || |||| || | || || ||||||||||| || || || ||||| | | | | Sbjct 64944 AACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGA 64885 Query 75135 TTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGC 75172 ||||| |||| |||||||| || || ||||| ||||| Sbjct 64884 TTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGC 64847 >seq2361 Length=63215 Score = 104 bits (114), Expect = 3e-17 Identities = 177/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 118045 ATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTACC 118104 ||| ||||||||||||| ||| || || || | | | | | | || |||| Sbjct 18039 ATCCGTCATGATCATCAAGCGTCCATAACGCAGACTGGTGACATTGCTGTACTCCTTGTT 18098 Query 118105 ATGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTT 118164 || ||||| || | ||||| || | ||| || |||||| || | | | | ||| | Sbjct 18099 GTGCTGGAGGCCCATAATCTTCTTGATGTTCTGAATTTCCTCGTTCTTCATGATCTGGTC 18158 Query 118165 TATGGTG-GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGT 118223 ||| | || |||||||||||| || ||| || ||||| || || || ||||| |||| Sbjct 18159 -ATGCTTTGCCTCCCGAACGTTGAGCAACTTTCCACGCAGCGGGAAGACACCAAAATTGT 18217 Query 118224 CACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAA 118283 | ||||| ||||||| || ||||| | ||| | ||||| || |||||||||||||| | Sbjct 18218 CGCGGCCAACAACGCCCAGTCCGGCCACAGCCAAAGCCTTTGCAGAGTCACCCTCGGTTA 18277 Query 118284 TAATAAGAGTGCAC 118297 || | ||| ||| Sbjct 18278 AGATTAAAGTACAC 18291 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGAC----CCGTAGACCTT 152867 || ||||||||||||| || || || ||||| || | ||||| | ||| |||| Sbjct 18040 TCCGTCATGATCATCAAGCGTCCATAACGCAG---AC-TGGTGACATTGCTGTACTCCTT 18095 Query 152868 TCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTG 152927 || || || || | ||||| |||| ||| || |||||| || | | | ||| Sbjct 18096 GTTGTGCTGGAGGCCCATAATCTTCTTGATGTTCTGAATTTCCTCGTTCTTCATGATCTG 18155 Query 152928 TTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGC 152987 | | | || |||||||| ||| || |||||| || || || || || || || Sbjct 18156 GTCATGCTTTGCCTCCCGAACGTTGAGCAACTTTCCACGCAGCGGGAAGACACCAAAATT 18215 Query 152988 GTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGT 153047 || |||||| ||||||| ||| ||||| | ||| | || || || |||||||||||||| Sbjct 18216 GTCGCGGCCAACAACGCCCAGTCCGGCCACAGCCAAAGCCTTTGCAGAGTCACCCTCGGT 18275 >seq4763 Length=6291 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| ||||| ||| |||||||| |||| ||||| | |||||||||||| Sbjct 3179 CTCGTGGTTGAAAAGAATTCCATTACACGCATACATTCCGTATGCCTCGCGGTAGTTAAC 3120 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| ||||| || | | ||||||| ||||| || ||||| || || ||||| || || Sbjct 3119 CGTAATCCAGTATGCGTACAGCTTGGCAACGCCGTACGGGCTGCGAGGATAGAAAGGCGT 3060 >seq5382 Length=4005 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| || || ||| |||||||| || ||||||||| |||||||||||| Sbjct 3577 CTCGTGGTTGAAAAGGATTCCATTACACGCATACGTCCCGTACGCCTCGCGGTAGTTAAC 3518 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| ||||| || | | ||||||| || || || | ||| || || ||||| || || Sbjct 3517 CGTAATCCAGTATGCGTACAGCTTGGCGACACCGTACGTGCTGCGAGGATAGAAAGGCGT 3458 Query 124832 G 124832 | Sbjct 3457 G 3457 >seq4642 Length=14046 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||| | |||||| ||| || |||||||| | ||||||| | || ||| | || Sbjct 8711 TCAAAGCCATTTACAAGACTGTATGGGAGATCTCGCAGAAGAAGGTCATCGACCTTGCTG 8652 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || ||||| || | ||| ||| ||| |||||||||| || || |||| Sbjct 8651 CCGACCGTGGAGCCTTCATTTGTCAGAGTCAGAGTCTGAACATCCATCTGCAGTCTCCTA 8592 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | | | |||||| |||||||| ||||| ||||||||||| || ||||| || | Sbjct 8591 CCGTTGGGCAGTTGACGAGCATGCACTTCTACGGATGGAAGAAGGGCCTTAAGACTGGCA 8532 Query 55908 TGTACTATCTGCGGACCCG 55926 |||||||| |||| ||||| Sbjct 8531 TGTACTATTTGCGCACCCG 8513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547170560551400