Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2220 127 2e-24
seq2361 104 3e-17
seq4763 100 3e-16
seq5382 93.3 5e-14
seq4642 89.7 6e-13
>seq2220
Length=173857
Score = 127 bits (140), Expect = 2e-24
Identities = 340/509 (67%), Gaps = 18/509 (4%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|| ||||| | ||| || | || || || || | || |||||||| || || || |||
Sbjct 63022 CCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGACCGCGTTTC 63081
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|| | ||| ||||||| ||||| ||| ||||||||| || ||||| || ||
Sbjct 63082 TTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAT 63141
Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG--GA--AGTCATCCAAGTCTGAGCCCATTC 74944
|| || | |||| || || |||| | || || ||| ||||| || | ||||| ||
Sbjct 63142 GCTACCAATCGTTCAGCAAA-GGTGGAACGTTGATCAGTTATCCACTTCAGTGCCCAGTC 63200
Query 74945 AGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAAGAGGCTT--GCCTTCTC 75001
|| || || || || ||||||| | | || || || | ||| ||| | || || ||
Sbjct 63201 GGCCTTGCGCTTAAC-GCAGGGAATGGTCTCCATGGCATCGAAAAGGTATTCGCGTTGTC 63259
Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061
| ||||||||||| |||| || | |||||||| ||||| || ||||| |||
Sbjct 63260 T--GGGATCCTTGATATAGGTGTCGATGAGGAGTGAGTAGGTCTCAGAGTGAATATTCTC 63317
Query 75062 GTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA 75121
| | ||| | ||||||| |||| || || || ||| || || || || ||
Sbjct 63318 CATCATAATTTGGAAACCGTAGAAGCACCGGGCTTCGGCGGCCTGAACCTCATTGGAGAA 63377
Query 75122 ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCAT 75181
| | ||| || || |||||||||| || || || ||||| || || |||||
Sbjct 63378 ACGCTCAACGAGGTTTTCATTGACGATGCCATCGGATGCAGCGAAGAAGGCGAGTACA-- 63435
Query 75182 TTTGATA--AAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCC 75236
| ||||| ||||||||||| | |||| ||| | ||| ||| || | | |||
Sbjct 63436 TGTGATATGAAGTGGCGCTCGTTGTCATTGAGACGGTTGGTCCAGTCATGAACGTCTTTT 63495
Query 75237 GCCAAATCAATCTCCTCGACCGTCCAGAA 75265
| | ||| |||||||| | ||||||||
Sbjct 63496 GAGAGATCCATCTCCTCAGCAGTCCAGAA 63524
Score = 100 bits (110), Expect = 3e-16
Identities = 264/398 (66%), Gaps = 9/398 (2%)
Strand=Plus/Minus
Query 74781 CTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAG 74840
|| || | ||| || || || | ||||| ||||| | ||||||||| || | ||| ||
Sbjct 65241 CTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTTTTGAGCCAGAAT 65182
Query 74841 ATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900
|| | ||| ||||| ||||||||||| || ||| ||||| || || || ||
Sbjct 65181 ATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAAGCAACTAGTCGG 65122
Query 74901 TGCGCGAACGGTGCATC---GGAAGTCATCCAAGTCTGA--GCCCATTCAGCTTTTCGTT 74955
||||| | |||| | || ||||| || | ||||| || || || || |
Sbjct 65121 GTAGCGAATGTGGCATGTTTGTCAGATATCCA--TCGTAACGCCCAGTCTGCCTTGCGCT 65064
Query 74956 TGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT-TGCCTTCTCTTCGGGATCCTTG 75014
| || || || | | || || || | ||| || |||| ||| | | |||||||
Sbjct 65063 TAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCG-CTCATTGACATCCTTG 65005
Query 75015 ACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGG 75074
| ||| |||| || | ||||| || ||||| ||||| || |||| | | |||
Sbjct 65004 ATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATCATGATTTGG 64945
Query 75075 TACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATA 75134
|| |||| || | || || ||||||||||| || || || ||||| | | | |
Sbjct 64944 AACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGCTCAACCAGA 64885
Query 75135 TTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGC 75172
||||| |||| |||||||| || || ||||| |||||
Sbjct 64884 TTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGC 64847
>seq2361
Length=63215
Score = 104 bits (114), Expect = 3e-17
Identities = 177/254 (70%), Gaps = 2/254 (1%)
Strand=Plus/Plus
Query 118045 ATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGTTATAAACCTTACC 118104
||| ||||||||||||| ||| || || || | | | | | | || ||||
Sbjct 18039 ATCCGTCATGATCATCAAGCGTCCATAACGCAGACTGGTGACATTGCTGTACTCCTTGTT 18098
Query 118105 ATGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTT 118164
|| ||||| || | ||||| || | ||| || |||||| || | | | | ||| |
Sbjct 18099 GTGCTGGAGGCCCATAATCTTCTTGATGTTCTGAATTTCCTCGTTCTTCATGATCTGGTC 18158
Query 118165 TATGGTG-GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGT 118223
||| | || |||||||||||| || ||| || ||||| || || || ||||| ||||
Sbjct 18159 -ATGCTTTGCCTCCCGAACGTTGAGCAACTTTCCACGCAGCGGGAAGACACCAAAATTGT 18217
Query 118224 CACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAA 118283
| ||||| ||||||| || ||||| | ||| | ||||| || |||||||||||||| |
Sbjct 18218 CGCGGCCAACAACGCCCAGTCCGGCCACAGCCAAAGCCTTTGCAGAGTCACCCTCGGTTA 18277
Query 118284 TAATAAGAGTGCAC 118297
|| | ||| |||
Sbjct 18278 AGATTAAAGTACAC 18291
Score = 89.7 bits (98), Expect = 6e-13
Identities = 165/240 (69%), Gaps = 8/240 (3%)
Strand=Plus/Plus
Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGAC----CCGTAGACCTT 152867
|| ||||||||||||| || || || ||||| || | ||||| | ||| ||||
Sbjct 18040 TCCGTCATGATCATCAAGCGTCCATAACGCAG---AC-TGGTGACATTGCTGTACTCCTT 18095
Query 152868 TCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTG 152927
|| || || || | ||||| |||| ||| || |||||| || | | | |||
Sbjct 18096 GTTGTGCTGGAGGCCCATAATCTTCTTGATGTTCTGAATTTCCTCGTTCTTCATGATCTG 18155
Query 152928 TTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGC 152987
| | | || |||||||| ||| || |||||| || || || || || || ||
Sbjct 18156 GTCATGCTTTGCCTCCCGAACGTTGAGCAACTTTCCACGCAGCGGGAAGACACCAAAATT 18215
Query 152988 GTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGT 153047
|| |||||| ||||||| ||| ||||| | ||| | || || || ||||||||||||||
Sbjct 18216 GTCGCGGCCAACAACGCCCAGTCCGGCCACAGCCAAAGCCTTTGCAGAGTCACCCTCGGT 18275
>seq4763
Length=6291
Score = 100 bits (110), Expect = 3e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771
|||||||||||| ||||| ||| |||||||| |||| ||||| | ||||||||||||
Sbjct 3179 CTCGTGGTTGAAAAGAATTCCATTACACGCATACATTCCGTATGCCTCGCGGTAGTTAAC 3120
Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831
||| ||||| || | | ||||||| ||||| || ||||| || || ||||| || ||
Sbjct 3119 CGTAATCCAGTATGCGTACAGCTTGGCAACGCCGTACGGGCTGCGAGGATAGAAAGGCGT 3060
>seq5382
Length=4005
Score = 93.3 bits (102), Expect = 5e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771
|||||||||||| || || ||| |||||||| || ||||||||| ||||||||||||
Sbjct 3577 CTCGTGGTTGAAAAGGATTCCATTACACGCATACGTCCCGTACGCCTCGCGGTAGTTAAC 3518
Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831
||| ||||| || | | ||||||| || || || | ||| || || ||||| || ||
Sbjct 3517 CGTAATCCAGTATGCGTACAGCTTGGCGACACCGTACGTGCTGCGAGGATAGAAAGGCGT 3458
Query 124832 G 124832
|
Sbjct 3457 G 3457
>seq4642
Length=14046
Score = 89.7 bits (98), Expect = 6e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||| | |||||| ||| || |||||||| | ||||||| | || ||| | ||
Sbjct 8711 TCAAAGCCATTTACAAGACTGTATGGGAGATCTCGCAGAAGAAGGTCATCGACCTTGCTG 8652
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
| || ||||| || | ||| ||| ||| |||||||||| || || ||||
Sbjct 8651 CCGACCGTGGAGCCTTCATTTGTCAGAGTCAGAGTCTGAACATCCATCTGCAGTCTCCTA 8592
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| | | |||||| |||||||| ||||| ||||||||||| || ||||| || |
Sbjct 8591 CCGTTGGGCAGTTGACGAGCATGCACTTCTACGGATGGAAGAAGGGCCTTAAGACTGGCA 8532
Query 55908 TGTACTATCTGCGGACCCG 55926
|||||||| |||| |||||
Sbjct 8531 TGTACTATTTGCGCACCCG 8513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547170560551400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |