Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4212 170 2e-37 seq4824 120 3e-22 seq1236 104 3e-17 seq6241 102 9e-17 seq4642 89.7 6e-13 seq6278 86.0 7e-12 >seq4212 Length=20478 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || ||||| || || || || ||||| ||||| | Sbjct 1685 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCT 1744 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| |||||||| ||||| Sbjct 1745 GACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 1804 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||||| |||||| || | || ||||| Sbjct 1805 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAAC 1864 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || ||||| || || | |||||||| || || Sbjct 1865 ATCCAGAAAGAGTCTACCCTTCACCTCGTTCTTCGTCTTCGTGGCGG 1911 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || || || ||||| | ||||| |||||| Sbjct 2141 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCA 2200 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || ||||||||||||||||| || || || || ||| Sbjct 2201 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 2260 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||||| ||| || || ||||||| ||| Sbjct 2261 CAGCGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAAT 2320 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || ||||| |||||||| ||||| Sbjct 2321 ATCCAGAAGGAGAGCACACTCCACCTTGTCTTACGTCTTCGTGGTGG 2367 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || | || || ||||| | Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || || ||||||||||| |||||||| |||||| Sbjct 1973 GACACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 2032 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| ||||| || | |||||| || | ||||| || Sbjct 2033 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAAC 2092 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||| || || ||| | |||||||| || || Sbjct 2093 ATTCAGAAGGAGTCCACTCTACACCTCGTCCTTCGTCTTCGTGGCGG 2139 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || |||||||||||||| || || || || |||||||| ||||||| ||| || Sbjct 1562 ATTCCACCCGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAACTTGAGGATGGTCGGACA 1621 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || || || |||||||||| || || ||||| | ||||||||||| || || Sbjct 1622 CTCTCCGATTACAACATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTCCGTGGA 1681 Query 27631 GG 27632 || Sbjct 1682 GG 1683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || |||||||| || || || || ||||||||||| | Sbjct 1405 ATGCAGATTTTTGTCAAGACACTCACCGGCAAAACCATCACCCTCGAGGTTGAGTCCTCT 1464 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||| | || | ||||| || || || ||||||||||| Sbjct 1465 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGG 1508 >seq4824 Length=32535 Score = 120 bits (132), Expect = 3e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || |||||||||||||| || || ||||| || || ||||| || || || | Sbjct 7 TGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAACAGCGCCTTATCTTCG 66 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| | || |||| |||||| || |||| ||||| | || ||||| |||| Sbjct 67 CAGGGAAGCAGTTGGAAGATGGTCGTACGCTCTCAGATTATAACATTCAGAAGGAGTCCA 126 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || ||| | |||||||| ||||| Sbjct 127 CCCTTCACCTCGTCCTCCGTCTTCGTGGTGG 157 >seq1236 Length=761 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || || || || || || | ||||| |||||| Sbjct 160 ATGCAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCC 101 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || ||||| |||||||| |||||||| ||||| Sbjct 100 GACACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAA 41 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC 27565 || || || || |||||||| ||||| | || |||| || Sbjct 40 CAACGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTC 1 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||| ||||| || || || ||||| ||||| || ||||||| ||| || Sbjct 283 ATCCCACCCGACCAACAGCGCCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACG 224 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || || || |||| ||||| || || ||||| || ||||||||||| || || Sbjct 223 CTCTCCGATTACAACATCCAGAAGGAGTCTACCCTTCACCTTGTCTTGCGTCTCCGTGGA 164 Query 27631 GG 27632 || Sbjct 163 GG 162 >seq6241 Length=43505 Score = 102 bits (112), Expect = 9e-17 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC- 27569 || || || |||||||||||||| || || || || ||||| |||||||||| ||||| Sbjct 25814 ATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGAAAGCAGCTCGAGGATGGCCGTACT 25873 Query 27570 CCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 | |||| ||||| || |||||||||||||||||||||| | ||| | || || || || Sbjct 25874 CTTAGC-GACTACAACATCCAAAAGGAATCCACTCTTCACTTGGTCCTCCGCCTCCGTGG 25932 Query 27630 TGG 27632 ||| Sbjct 25933 TGG 25935 >seq4642 Length=14046 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || |||| |||||||||||| ||||| |||||||||||||| ||||| | |||||| Sbjct 8513 CGGGTGCGCAAATAGTACATGCCAGTCTTAAGGCCCTTCTTCCATCCGTAGAAGTGCATG 8572 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 | | || | ||| || || || || |||||||||| |||| |||||| Sbjct 8573 CTCGTCAACTGCCCAACGGTAGGAGACTGCAGATGGATGTTCAGACTCTGACTCTGACAA 8632 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||||| || ||||| || || || | || || | ||| || | || |||||||| Sbjct 8633 ATGAAGGCTCCACGGTCGGCAGCAAGGTCGATGACCTTCTTCTGCGAGATCTCCCATACA 8692 Query 80215 GT 80216 || Sbjct 8693 GT 8694 >seq6278 Length=62549 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||| ||||| || || || ||||| |||||||||||||||| || ||| Sbjct 46724 ATTCCCCCTGACCAACAGCGCCTCATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACC 46665 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || ||| ||||| || |||| ||||| ||||| || || || ||| Sbjct 46664 CTCAGC-GACTACAACATCCAGAAGGAGTCCACGCTCCACCTTGTC 46620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570263042850160