Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 170 2e-37
seq4824 120 3e-22
seq1236 104 3e-17
seq6241 102 9e-17
seq4642 89.7 6e-13
seq6278 86.0 7e-12
>seq4212
Length=20478
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || ||||| || || || || ||||| ||||| |
Sbjct 1685 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCT 1744
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || |||||||||||||| |||||||| |||||
Sbjct 1745 GACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 1804
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| ||||| || ||||||| |||||| || | || |||||
Sbjct 1805 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAAC 1864
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || ||||| || || | |||||||| || ||
Sbjct 1865 ATCCAGAAAGAGTCTACCCTTCACCTCGTTCTTCGTCTTCGTGGCGG 1911
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || || || ||||| | ||||| ||||||
Sbjct 2141 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCA 2200
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || ||||||||||||||||| || || || || |||
Sbjct 2201 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 2260
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || ||||| || ||||||| ||| || || ||||||| |||
Sbjct 2261 CAGCGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAAT 2320
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||| || || || ||||| |||||||| |||||
Sbjct 2321 ATCCAGAAGGAGAGCACACTCCACCTTGTCTTACGTCTTCGTGGTGG 2367
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || ||||| || || | || || ||||| |
Sbjct 1913 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCT 1972
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || ||||||| || || || ||||||||||| |||||||| ||||||
Sbjct 1973 GACACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 2032
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || || || ||||| ||||| || | |||||| || | ||||| ||
Sbjct 2033 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAAC 2092
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| |||||||| || || ||| | |||||||| || ||
Sbjct 2093 ATTCAGAAGGAGTCCACTCTACACCTCGTCCTTCGTCTTCGTGGCGG 2139
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570
||||| || |||||||||||||| || || || || |||||||| ||||||| ||| ||
Sbjct 1562 ATTCCACCCGACCAGCAGCGTCTCATCTTCGCGGGCAAGCAACTTGAGGATGGTCGGACA 1621
Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630
|| | || || || |||||||||| || || ||||| | ||||||||||| || ||
Sbjct 1622 CTCTCCGATTACAACATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTCCGTGGA 1681
Query 27631 GG 27632
||
Sbjct 1682 GG 1683
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||||||||| || |||||||| || || || || ||||||||||| |
Sbjct 1405 ATGCAGATTTTTGTCAAGACACTCACCGGCAAAACCATCACCCTCGAGGTTGAGTCCTCT 1464
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|||| ||| | || | ||||| || || || |||||||||||
Sbjct 1465 GATACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGG 1508
>seq4824
Length=32535
Score = 120 bits (132), Expect = 3e-22
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541
||||||| || |||||||||||||| || || ||||| || || ||||| || || || |
Sbjct 7 TGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAACAGCGCCTTATCTTCG 66
Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601
| || ||||| | || |||| |||||| || |||| ||||| | || ||||| ||||
Sbjct 67 CAGGGAAGCAGTTGGAAGATGGTCGTACGCTCTCAGATTATAACATTCAGAAGGAGTCCA 126
Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| || ||| | |||||||| |||||
Sbjct 127 CCCTTCACCTCGTCCTCCGTCTTCGTGGTGG 157
>seq1236
Length=761
Score = 104 bits (114), Expect = 3e-17
Identities = 119/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||||||| || || || || || || || || | ||||| ||||||
Sbjct 160 ATGCAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCC 101
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || || ||||| |||||||| |||||||| |||||
Sbjct 100 GACACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAA 41
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC 27565
|| || || || |||||||| ||||| | || |||| ||
Sbjct 40 CAACGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTC 1
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570
|| || || ||||| ||||| || || || ||||| ||||| || ||||||| ||| ||
Sbjct 283 ATCCCACCCGACCAACAGCGCCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACG 224
Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630
|| | || || || |||| ||||| || || ||||| || ||||||||||| || ||
Sbjct 223 CTCTCCGATTACAACATCCAGAAGGAGTCTACCCTTCACCTTGTCTTGCGTCTCCGTGGA 164
Query 27631 GG 27632
||
Sbjct 163 GG 162
>seq6241
Length=43505
Score = 102 bits (112), Expect = 9e-17
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC- 27569
|| || || |||||||||||||| || || || || ||||| |||||||||| |||||
Sbjct 25814 ATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGAAAGCAGCTCGAGGATGGCCGTACT 25873
Query 27570 CCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629
| |||| ||||| || |||||||||||||||||||||| | ||| | || || || ||
Sbjct 25874 CTTAGC-GACTACAACATCCAAAAGGAATCCACTCTTCACTTGGTCCTCCGCCTCCGTGG 25932
Query 27630 TGG 27632
|||
Sbjct 25933 TGG 25935
>seq4642
Length=14046
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094
|| || |||| |||||||||||| ||||| |||||||||||||| ||||| | ||||||
Sbjct 8513 CGGGTGCGCAAATAGTACATGCCAGTCTTAAGGCCCTTCTTCCATCCGTAGAAGTGCATG 8572
Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154
| | || | ||| || || || || |||||||||| |||| ||||||
Sbjct 8573 CTCGTCAACTGCCCAACGGTAGGAGACTGCAGATGGATGTTCAGACTCTGACTCTGACAA 8632
Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214
||||| || ||||| || || || | || || | ||| || | || ||||||||
Sbjct 8633 ATGAAGGCTCCACGGTCGGCAGCAAGGTCGATGACCTTCTTCTGCGAGATCTCCCATACA 8692
Query 80215 GT 80216
||
Sbjct 8693 GT 8694
>seq6278
Length=62549
Score = 86.0 bits (94), Expect = 7e-12
Identities = 84/106 (79%), Gaps = 2/106 (2%)
Strand=Plus/Minus
Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570
||||| || ||||| ||||| || || || ||||| |||||||||||||||| || |||
Sbjct 46724 ATTCCCCCTGACCAACAGCGCCTCATCTTCGCTGGAAAGCAACTCGAGGATGGCCGCACC 46665
Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
|| ||| ||||| || |||| ||||| ||||| || || || |||
Sbjct 46664 CTCAGC-GACTACAACATCCAGAAGGAGTCCACGCTCCACCTTGTC 46620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570263042850160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |